RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 NWD1Q149M9 1564 aa18.38■□□□□ 0.53
LIG1-217ENST00000599165 UBAP1LF5GYI3 381 aa18.38■□□□□ 0.53
LIG1-217ENST00000599165 PLEKHG1Q9ULL1 1385 aa18.38■□□□□ 0.53
LIG1-217ENST00000599165 SLC26A8Q96RN1 970 aa18.37■□□□□ 0.53
LIG1-217ENST00000599165 ADAMTS13Q76LX8 1427 aa18.36■□□□□ 0.53
LIG1-217ENST00000599165 CHD2O14647 1828 aaKnown RBP18.35■□□□□ 0.53
LIG1-217ENST00000599165 NRXN3Q9Y4C0 1643 aa18.34■□□□□ 0.53
LIG1-217ENST00000599165 CHGAP10645 457 aaKnown RBP18.34■□□□□ 0.53
LIG1-217ENST00000599165 NUTM2DQ5VT03 806 aaPredicted RBP18.33■□□□□ 0.52
LIG1-217ENST00000599165 SENP3Q9H4L4 574 aaPredicted RBP18.33■□□□□ 0.52
LIG1-217ENST00000599165 KIF1BO60333 1816 aa18.31■□□□□ 0.52
LIG1-217ENST00000599165 KCNA6P17658 529 aa18.31■□□□□ 0.52
LIG1-217ENST00000599165 TRIM52Q96A61 297 aa18.31■□□□□ 0.52
LIG1-217ENST00000599165 NEXMIFQ5QGS0 1516 aa18.31■□□□□ 0.52
LIG1-217ENST00000599165 NKTRP30414 1462 aaKnown RBP18.29■□□□□ 0.52
LIG1-217ENST00000599165 DIP2AQ14689 1571 aa18.29■□□□□ 0.52
LIG1-217ENST00000599165 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.28■□□□□ 0.52
LIG1-217ENST00000599165 SLC4A1APQ9BWU0 796 aaKnown RBP18.28■□□□□ 0.52
LIG1-217ENST00000599165 SETBP1Q9Y6X0 1596 aa18.28■□□□□ 0.52
LIG1-217ENST00000599165 TMEM94Q12767 1356 aa18.28■□□□□ 0.52
LIG1-217ENST00000599165 PPP1R15AO75807 674 aaPredicted RBP18.27■□□□□ 0.52
LIG1-217ENST00000599165 TBX22Q9Y458 520 aa18.27■□□□□ 0.52
LIG1-217ENST00000599165 TOM1O60784 492 aa18.26■□□□□ 0.51
LIG1-217ENST00000599165 FOXD1Q16676 465 aa18.26■□□□□ 0.51
LIG1-217ENST00000599165 PTPRUQ92729 1446 aa18.25■□□□□ 0.51
LIG1-217ENST00000599165 HDGFP51858 240 aaKnown RBP18.25■□□□□ 0.51
LIG1-217ENST00000599165 PIP4K2BP78356 416 aa18.25■□□□□ 0.51
LIG1-217ENST00000599165 RBM33Q96EV2 1170 aaKnown RBP18.25■□□□□ 0.51
LIG1-217ENST00000599165 SETD5Q9C0A6 1442 aa18.24■□□□□ 0.51
LIG1-217ENST00000599165 SETD1AO15047 1707 aaKnown RBP18.23■□□□□ 0.51
LIG1-217ENST00000599165 PPLO60437 1756 aa18.23■□□□□ 0.51
LIG1-217ENST00000599165 HSPA1LP34931 641 aa18.23■□□□□ 0.51
LIG1-217ENST00000599165 BCANQ96GW7 911 aa18.23■□□□□ 0.51
LIG1-217ENST00000599165 XRN1Q8IZH2 1706 aaKnown RBP18.23■□□□□ 0.51
LIG1-217ENST00000599165 MPHOSPH9Q99550 1183 aa18.22■□□□□ 0.51
LIG1-217ENST00000599165 PIK3R4Q99570 1358 aa18.21■□□□□ 0.51
LIG1-217ENST00000599165 RAB3GAP2Q9H2M9 1393 aa18.2■□□□□ 0.5
LIG1-217ENST00000599165 PROSER2Q86WR7 435 aaPredicted RBP18.2■□□□□ 0.5
LIG1-217ENST00000599165 SCAF1Q9H7N4 1312 aaKnown RBP18.2■□□□□ 0.5
LIG1-217ENST00000599165 ZNF326Q5BKZ1 582 aaKnown RBP18.19■□□□□ 0.5
LIG1-217ENST00000599165 METP08581 1390 aa18.18■□□□□ 0.5
LIG1-217ENST00000599165 IFT172Q9UG01 1749 aa18.18■□□□□ 0.5
LIG1-217ENST00000599165 SPATA31E1Q6ZUB1 1445 aa18.18■□□□□ 0.5
LIG1-217ENST00000599165 ROBO1Q9Y6N7 1651 aa18.15■□□□□ 0.5
LIG1-217ENST00000599165 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.15■□□□□ 0.5
LIG1-217ENST00000599165 CCDC144AA2RUR9 1427 aa18.15■□□□□ 0.5
LIG1-217ENST00000599165 AMOTL2Q9Y2J4 779 aa18.14■□□□□ 0.49
LIG1-217ENST00000599165 FAM135BQ49AJ0 1406 aa18.14■□□□□ 0.49
LIG1-217ENST00000599165 NCOA3Q9Y6Q9 1424 aa18.14■□□□□ 0.49
LIG1-217ENST00000599165 RPGRIP1LQ68CZ1 1315 aa18.12■□□□□ 0.49
LIG1-217ENST00000599165 MSH6P52701 1360 aa18.12■□□□□ 0.49
LIG1-217ENST00000599165 MED1Q15648 1581 aaPredicted RBP18.1■□□□□ 0.49
LIG1-217ENST00000599165 DISP3Q9P2K9 1392 aa18.1■□□□□ 0.49
LIG1-217ENST00000599165 NALCNQ8IZF0 1738 aa18.09■□□□□ 0.49
LIG1-217ENST00000599165 PRAG1Q86YV5 1406 aa18.08■□□□□ 0.49
LIG1-217ENST00000599165 ADGRF5Q8IZF2 1346 aa18.08■□□□□ 0.49
LIG1-217ENST00000599165 ACIN1Q9UKV3 1341 aaKnown RBP18.07■□□□□ 0.48
LIG1-217ENST00000599165 VGFO15240 615 aaPredicted RBP18.07■□□□□ 0.48
LIG1-217ENST00000599165 ASXL1Q8IXJ9 1541 aa18.07■□□□□ 0.48
LIG1-217ENST00000599165 ANKRD30BQ9BXX2 1392 aa18.05■□□□□ 0.48
LIG1-217ENST00000599165 ILDR2Q71H61 639 aa18.05■□□□□ 0.48
LIG1-217ENST00000599165 SLAIN2Q9P270 581 aa18.05■□□□□ 0.48
LIG1-217ENST00000599165 HRCP23327 699 aa18.04■□□□□ 0.48
LIG1-217ENST00000599165 RGL3Q3MIN7 710 aa18.04■□□□□ 0.48
LIG1-217ENST00000599165 C19orf44Q9H6X5 657 aa18.04■□□□□ 0.48
LIG1-217ENST00000599165 PTCH1Q13635 1447 aa18.04■□□□□ 0.48
LIG1-217ENST00000599165 ROBO2Q9HCK4 1378 aa18.04■□□□□ 0.48
LIG1-217ENST00000599165 PIK3C2GO75747 1445 aa18.03■□□□□ 0.48
LIG1-217ENST00000599165 DCCP43146 1447 aa18.03■□□□□ 0.48
LIG1-217ENST00000599165 NRXN1Q9ULB1 1477 aa18.02■□□□□ 0.48
LIG1-217ENST00000599165 COL16A1Q07092 1604 aaPredicted RBP18.02■□□□□ 0.48
LIG1-217ENST00000599165 PHLPP1O60346 1717 aa18.02■□□□□ 0.48
LIG1-217ENST00000599165 ADGRL3Q9HAR2 1447 aa18.02■□□□□ 0.48
LIG1-217ENST00000599165 MST1RQ04912 1400 aa18■□□□□ 0.47
LIG1-217ENST00000599165 MYOM2P54296 1465 aa18■□□□□ 0.47
LIG1-217ENST00000599165 AHDC1Q5TGY3 1603 aaPredicted RBP17.99■□□□□ 0.47
LIG1-217ENST00000599165 C14orf37Q86TY3 774 aa17.99■□□□□ 0.47
LIG1-217ENST00000599165 CADPS2Q86UW7 1296 aa17.99■□□□□ 0.47
LIG1-217ENST00000599165 KNDC1Q76NI1 1749 aa17.98■□□□□ 0.47
LIG1-217ENST00000599165 TECPR2O15040 1411 aa17.97■□□□□ 0.47
LIG1-217ENST00000599165 ATF3P18847 181 aa17.96■□□□□ 0.47
LIG1-217ENST00000599165 NHSL1Q5SYE7 1610 aa17.95■□□□□ 0.46
LIG1-217ENST00000599165 BRINP3Q76B58 766 aa17.95■□□□□ 0.46
LIG1-217ENST00000599165 LAMC1P11047 1609 aa17.94■□□□□ 0.46
LIG1-217ENST00000599165 LRPPRCP42704 1394 aaKnown RBP17.93■□□□□ 0.46
LIG1-217ENST00000599165 TMEM132EQ6IEE7 984 aa17.93■□□□□ 0.46
LIG1-217ENST00000599165 C14orf93Q9H972 538 aaKnown RBP17.92■□□□□ 0.46
LIG1-217ENST00000599165 DHX57Q6P158 1386 aaKnown RBP17.91■□□□□ 0.46
LIG1-217ENST00000599165 ABCC11Q96J66 1382 aa17.91■□□□□ 0.46
LIG1-217ENST00000599165 PLEKHH1Q9ULM0 1364 aa17.91■□□□□ 0.46
LIG1-217ENST00000599165 ADGRB1O14514 1584 aa17.91■□□□□ 0.46
LIG1-217ENST00000599165 CDC42BPGQ6DT37 1551 aa17.91■□□□□ 0.46
LIG1-217ENST00000599165 YTHDC2Q9H6S0 1430 aaKnown RBP17.9■□□□□ 0.46
LIG1-217ENST00000599165 C1orf167Q5SNV9 1468 aa17.9■□□□□ 0.46
LIG1-217ENST00000599165 CFAP70Q5T0N1 1121 aa17.9■□□□□ 0.46
LIG1-217ENST00000599165 SHPRHQ149N8 1683 aa17.9■□□□□ 0.46
LIG1-217ENST00000599165 RGS17Q9UGC6 210 aaPredicted RBP17.89■□□□□ 0.45
LIG1-217ENST00000599165 WAPLQ7Z5K2 1190 aa17.88■□□□□ 0.45
LIG1-217ENST00000599165 STK26Q9P289 416 aa17.88■□□□□ 0.45
LIG1-217ENST00000599165 JCADQ9P266 1359 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms