RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 XIRP1Q702N8 1843 aaKnown RBP14.67□□□□□ -0.06
CLN6-209ENST00000569336 TRIM52Q96A61 297 aa14.67□□□□□ -0.06
CLN6-209ENST00000569336 EID1Q9Y6B2 187 aa14.67□□□□□ -0.06
CLN6-209ENST00000569336 DIP2AQ14689 1571 aa14.67□□□□□ -0.06
CLN6-209ENST00000569336 UBAP1LF5GYI3 381 aa14.65□□□□□ -0.06
CLN6-209ENST00000569336 ZFYVE9O95405 1425 aa14.65□□□□□ -0.06
CLN6-209ENST00000569336 SLC4A1APQ9BWU0 796 aaKnown RBP14.63□□□□□ -0.07
CLN6-209ENST00000569336 RIMS2Q9UQ26 1411 aa14.63□□□□□ -0.07
CLN6-209ENST00000569336 NWD1Q149M9 1564 aa14.63□□□□□ -0.07
CLN6-209ENST00000569336 RAB3GAP2Q9H2M9 1393 aa14.62□□□□□ -0.07
CLN6-209ENST00000569336 TXNDC2Q86VQ3 553 aa14.62□□□□□ -0.07
CLN6-209ENST00000569336 NEXMIFQ5QGS0 1516 aa14.61□□□□□ -0.07
CLN6-209ENST00000569336 HDGFP51858 240 aaKnown RBP14.61□□□□□ -0.07
CLN6-209ENST00000569336 ZNF335Q9H4Z2 1342 aaPredicted RBP14.61□□□□□ -0.07
CLN6-209ENST00000569336 NRXN3Q9Y4C0 1643 aa14.6□□□□□ -0.07
CLN6-209ENST00000569336 SETBP1Q9Y6X0 1596 aa14.6□□□□□ -0.07
CLN6-209ENST00000569336 CHGAP10645 457 aaKnown RBP14.59□□□□□ -0.07
CLN6-209ENST00000569336 LTKP29376 864 aa14.59□□□□□ -0.07
CLN6-209ENST00000569336 SCAF1Q9H7N4 1312 aaKnown RBP14.59□□□□□ -0.07
CLN6-209ENST00000569336 PLEKHG1Q9ULL1 1385 aa14.59□□□□□ -0.07
CLN6-209ENST00000569336 SETD1AO15047 1707 aaKnown RBP14.58□□□□□ -0.07
CLN6-209ENST00000569336 PPP1R15AO75807 674 aaPredicted RBP14.58□□□□□ -0.08
CLN6-209ENST00000569336 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.58□□□□□ -0.08
CLN6-209ENST00000569336 PHF23Q9BUL5 403 aaPredicted RBP14.58□□□□□ -0.08
CLN6-209ENST00000569336 CCDC144AA2RUR9 1427 aa14.58□□□□□ -0.08
CLN6-209ENST00000569336 NKTRP30414 1462 aaKnown RBP14.57□□□□□ -0.08
CLN6-209ENST00000569336 MPHOSPH9Q99550 1183 aa14.55□□□□□ -0.08
CLN6-209ENST00000569336 LAMC1P11047 1609 aa14.55□□□□□ -0.08
CLN6-209ENST00000569336 XRN1Q8IZH2 1706 aaKnown RBP14.55□□□□□ -0.08
CLN6-209ENST00000569336 LRRC7Q96NW7 1537 aa14.53□□□□□ -0.08
CLN6-209ENST00000569336 ZNF326Q5BKZ1 582 aaKnown RBP14.53□□□□□ -0.08
CLN6-209ENST00000569336 HRCP23327 699 aa14.52□□□□□ -0.09
CLN6-209ENST00000569336 BCANQ96GW7 911 aa14.52□□□□□ -0.09
CLN6-209ENST00000569336 PIP4K2BP78356 416 aa14.51□□□□□ -0.09
CLN6-209ENST00000569336 HSPA1LP34931 641 aa14.5□□□□□ -0.09
CLN6-209ENST00000569336 ADAMTS13Q76LX8 1427 aa14.49□□□□□ -0.09
CLN6-209ENST00000569336 KNDC1Q76NI1 1749 aa14.49□□□□□ -0.09
CLN6-209ENST00000569336 PIK3R4Q99570 1358 aa14.49□□□□□ -0.09
CLN6-209ENST00000569336 MED1Q15648 1581 aaPredicted RBP14.49□□□□□ -0.09
CLN6-209ENST00000569336 FOXD1Q16676 465 aa14.48□□□□□ -0.09
CLN6-209ENST00000569336 SLC26A8Q96RN1 970 aa14.48□□□□□ -0.09
CLN6-209ENST00000569336 SPATA31E1Q6ZUB1 1445 aa14.48□□□□□ -0.09
CLN6-209ENST00000569336 RPGRIP1LQ68CZ1 1315 aa14.47□□□□□ -0.09
CLN6-209ENST00000569336 ALKQ9UM73 1620 aa14.47□□□□□ -0.09
CLN6-209ENST00000569336 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.46□□□□□ -0.09
CLN6-209ENST00000569336 NALCNQ8IZF0 1738 aa14.46□□□□□ -0.1
CLN6-209ENST00000569336 KCNA6P17658 529 aa14.45□□□□□ -0.1
CLN6-209ENST00000569336 NUTM2DQ5VT03 806 aaPredicted RBP14.45□□□□□ -0.1
CLN6-209ENST00000569336 TBX22Q9Y458 520 aa14.45□□□□□ -0.1
CLN6-209ENST00000569336 VGFO15240 615 aaPredicted RBP14.44□□□□□ -0.1
CLN6-209ENST00000569336 ANKRD30BQ9BXX2 1392 aa14.44□□□□□ -0.1
CLN6-209ENST00000569336 MYOM2P54296 1465 aa14.44□□□□□ -0.1
CLN6-209ENST00000569336 ROBO1Q9Y6N7 1651 aa14.42□□□□□ -0.1
CLN6-209ENST00000569336 KIAA1210Q9ULL0 1709 aa14.41□□□□□ -0.1
CLN6-209ENST00000569336 TOM1O60784 492 aa14.41□□□□□ -0.1
CLN6-209ENST00000569336 SENP3Q9H4L4 574 aaPredicted RBP14.41□□□□□ -0.1
CLN6-209ENST00000569336 NCOA3Q9Y6Q9 1424 aa14.41□□□□□ -0.1
CLN6-209ENST00000569336 TMEM94Q12767 1356 aa14.4□□□□□ -0.1
CLN6-209ENST00000569336 PIK3C2GO75747 1445 aa14.39□□□□□ -0.11
CLN6-209ENST00000569336 PRAG1Q86YV5 1406 aa14.39□□□□□ -0.11
CLN6-209ENST00000569336 NRXN1Q9ULB1 1477 aa14.38□□□□□ -0.11
CLN6-209ENST00000569336 MSH6P52701 1360 aa14.38□□□□□ -0.11
CLN6-209ENST00000569336 TRIM26Q12899 539 aaPredicted RBP14.38□□□□□ -0.11
CLN6-209ENST00000569336 PROSER2Q86WR7 435 aaPredicted RBP14.38□□□□□ -0.11
CLN6-209ENST00000569336 PTCH1Q13635 1447 aa14.38□□□□□ -0.11
CLN6-209ENST00000569336 RGL3Q3MIN7 710 aa14.37□□□□□ -0.11
CLN6-209ENST00000569336 PTPRUQ92729 1446 aa14.37□□□□□ -0.11
CLN6-209ENST00000569336 PHLPP1O60346 1717 aa14.37□□□□□ -0.11
CLN6-209ENST00000569336 METP08581 1390 aa14.36□□□□□ -0.11
CLN6-209ENST00000569336 ASXL1Q8IXJ9 1541 aa14.36□□□□□ -0.11
CLN6-209ENST00000569336 DCCP43146 1447 aa14.35□□□□□ -0.11
CLN6-209ENST00000569336 AMOTL2Q9Y2J4 779 aa14.34□□□□□ -0.11
CLN6-209ENST00000569336 ARHGEF28Q8N1W1 1705 aaKnown RBP14.33□□□□□ -0.12
CLN6-209ENST00000569336 CDC42BPGQ6DT37 1551 aa14.32□□□□□ -0.12
CLN6-209ENST00000569336 C14orf37Q86TY3 774 aa14.32□□□□□ -0.12
CLN6-209ENST00000569336 ADGRF5Q8IZF2 1346 aa14.32□□□□□ -0.12
CLN6-209ENST00000569336 ADGRL3Q9HAR2 1447 aa14.32□□□□□ -0.12
CLN6-209ENST00000569336 NHSL1Q5SYE7 1610 aa14.31□□□□□ -0.12
CLN6-209ENST00000569336 FMN2Q9NZ56 1722 aa14.31□□□□□ -0.12
CLN6-209ENST00000569336 RGPD8O14715 1765 aaPredicted RBP14.31□□□□□ -0.12
CLN6-209ENST00000569336 TECPR2O15040 1411 aa14.31□□□□□ -0.12
CLN6-209ENST00000569336 STAC3Q96MF2 364 aa14.3□□□□□ -0.12
CLN6-209ENST00000569336 ADGRB1O14514 1584 aa14.28□□□□□ -0.12
CLN6-209ENST00000569336 ITSN1Q15811 1721 aa14.28□□□□□ -0.12
CLN6-209ENST00000569336 FAM135BQ49AJ0 1406 aa14.28□□□□□ -0.12
CLN6-209ENST00000569336 DLC1Q96QB1 1528 aa14.28□□□□□ -0.12
CLN6-209ENST00000569336 AHDC1Q5TGY3 1603 aaPredicted RBP14.27□□□□□ -0.12
CLN6-209ENST00000569336 TRPM1Q7Z4N2 1603 aa14.27□□□□□ -0.12
CLN6-209ENST00000569336 YTHDC2Q9H6S0 1430 aaKnown RBP14.27□□□□□ -0.12
CLN6-209ENST00000569336 CADPS2Q86UW7 1296 aa14.27□□□□□ -0.13
CLN6-209ENST00000569336 RBM33Q96EV2 1170 aaKnown RBP14.27□□□□□ -0.13
CLN6-209ENST00000569336 C19orf44Q9H6X5 657 aa14.27□□□□□ -0.13
CLN6-209ENST00000569336 SHPRHQ149N8 1683 aa14.26□□□□□ -0.13
CLN6-209ENST00000569336 COL16A1Q07092 1604 aaPredicted RBP14.26□□□□□ -0.13
CLN6-209ENST00000569336 LRPPRCP42704 1394 aaKnown RBP14.26□□□□□ -0.13
CLN6-209ENST00000569336 DHX57Q6P158 1386 aaKnown RBP14.26□□□□□ -0.13
CLN6-209ENST00000569336 ATF3P18847 181 aa14.26□□□□□ -0.13
CLN6-209ENST00000569336 KIF1AQ12756 1690 aa14.26□□□□□ -0.13
CLN6-209ENST00000569336 ADGRB2O60241 1585 aa14.26□□□□□ -0.13
CLN6-209ENST00000569336 ROBO2Q9HCK4 1378 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms