RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 XIRP1Q702N8 1843 aaKnown RBP22.57■■□□□ 1.2
CLN3-213ENST00000565047 KCNA6P17658 529 aa22.56■■□□□ 1.2
CLN3-213ENST00000565047 NWD1Q149M9 1564 aa22.52■■□□□ 1.2
CLN3-213ENST00000565047 HDGFP51858 240 aaKnown RBP22.52■■□□□ 1.2
CLN3-213ENST00000565047 PIP4K2BP78356 416 aa22.52■■□□□ 1.2
CLN3-213ENST00000565047 SPHKAPQ2M3C7 1700 aa22.51■■□□□ 1.19
CLN3-213ENST00000565047 ADAMTS13Q76LX8 1427 aa22.5■■□□□ 1.19
CLN3-213ENST00000565047 CHGAP10645 457 aaKnown RBP22.5■■□□□ 1.19
CLN3-213ENST00000565047 HSPA1LP34931 641 aa22.5■■□□□ 1.19
CLN3-213ENST00000565047 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.5■■□□□ 1.19
CLN3-213ENST00000565047 TBX22Q9Y458 520 aa22.5■■□□□ 1.19
CLN3-213ENST00000565047 TMEM94Q12767 1356 aa22.48■■□□□ 1.19
CLN3-213ENST00000565047 TRPM2O94759 1503 aa22.47■■□□□ 1.19
CLN3-213ENST00000565047 NUTM2DQ5VT03 806 aaPredicted RBP22.46■■□□□ 1.19
CLN3-213ENST00000565047 NKTRP30414 1462 aaKnown RBP22.46■■□□□ 1.19
CLN3-213ENST00000565047 CHD2O14647 1828 aaKnown RBP22.45■■□□□ 1.19
CLN3-213ENST00000565047 PPP1R15AO75807 674 aaPredicted RBP22.45■■□□□ 1.18
CLN3-213ENST00000565047 CLTCL1P53675 1640 aa22.45■■□□□ 1.18
CLN3-213ENST00000565047 SENP3Q9H4L4 574 aaPredicted RBP22.44■■□□□ 1.18
CLN3-213ENST00000565047 SCAF1Q9H7N4 1312 aaKnown RBP22.44■■□□□ 1.18
CLN3-213ENST00000565047 BCANQ96GW7 911 aa22.43■■□□□ 1.18
CLN3-213ENST00000565047 PROSER2Q86WR7 435 aaPredicted RBP22.42■■□□□ 1.18
CLN3-213ENST00000565047 RBM33Q96EV2 1170 aaKnown RBP22.42■■□□□ 1.18
CLN3-213ENST00000565047 DISP3Q9P2K9 1392 aa22.41■■□□□ 1.18
CLN3-213ENST00000565047 TRIM52Q96A61 297 aa22.41■■□□□ 1.18
CLN3-213ENST00000565047 NRXN3Q9Y4C0 1643 aa22.41■■□□□ 1.18
CLN3-213ENST00000565047 DIP2AQ14689 1571 aa22.41■■□□□ 1.18
CLN3-213ENST00000565047 PIK3R4Q99570 1358 aa22.4■■□□□ 1.18
CLN3-213ENST00000565047 SLC4A1APQ9BWU0 796 aaKnown RBP22.39■■□□□ 1.17
CLN3-213ENST00000565047 SETBP1Q9Y6X0 1596 aa22.38■■□□□ 1.17
CLN3-213ENST00000565047 NEXMIFQ5QGS0 1516 aa22.38■■□□□ 1.17
CLN3-213ENST00000565047 FAM135BQ49AJ0 1406 aa22.38■■□□□ 1.17
CLN3-213ENST00000565047 PTPRUQ92729 1446 aa22.38■■□□□ 1.17
CLN3-213ENST00000565047 ILDR2Q71H61 639 aa22.36■■□□□ 1.17
CLN3-213ENST00000565047 NCOA3Q9Y6Q9 1424 aa22.35■■□□□ 1.17
CLN3-213ENST00000565047 ZNF326Q5BKZ1 582 aaKnown RBP22.33■■□□□ 1.17
CLN3-213ENST00000565047 FOXD1Q16676 465 aa22.32■■□□□ 1.16
CLN3-213ENST00000565047 KIF1BO60333 1816 aa22.31■■□□□ 1.16
CLN3-213ENST00000565047 METP08581 1390 aa22.3■■□□□ 1.16
CLN3-213ENST00000565047 MSH6P52701 1360 aa22.3■■□□□ 1.16
CLN3-213ENST00000565047 MPHOSPH9Q99550 1183 aa22.3■■□□□ 1.16
CLN3-213ENST00000565047 AMOTL2Q9Y2J4 779 aa22.3■■□□□ 1.16
CLN3-213ENST00000565047 MED1Q15648 1581 aaPredicted RBP22.28■■□□□ 1.16
CLN3-213ENST00000565047 XRN1Q8IZH2 1706 aaKnown RBP22.28■■□□□ 1.16
CLN3-213ENST00000565047 SETD5Q9C0A6 1442 aa22.27■■□□□ 1.16
CLN3-213ENST00000565047 SLAIN2Q9P270 581 aa22.27■■□□□ 1.16
CLN3-213ENST00000565047 RPGRIP1LQ68CZ1 1315 aa22.27■■□□□ 1.16
CLN3-213ENST00000565047 ROBO1Q9Y6N7 1651 aa22.26■■□□□ 1.15
CLN3-213ENST00000565047 C19orf44Q9H6X5 657 aa22.24■■□□□ 1.15
CLN3-213ENST00000565047 SPATA31E1Q6ZUB1 1445 aa22.23■■□□□ 1.15
CLN3-213ENST00000565047 VGFO15240 615 aaPredicted RBP22.23■■□□□ 1.15
CLN3-213ENST00000565047 SETD1AO15047 1707 aaKnown RBP22.23■■□□□ 1.15
CLN3-213ENST00000565047 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.23■■□□□ 1.15
CLN3-213ENST00000565047 ACIN1Q9UKV3 1341 aaKnown RBP22.21■■□□□ 1.15
CLN3-213ENST00000565047 PPLO60437 1756 aa22.2■■□□□ 1.14
CLN3-213ENST00000565047 RAB3GAP2Q9H2M9 1393 aa22.19■■□□□ 1.14
CLN3-213ENST00000565047 CCDC144AA2RUR9 1427 aa22.19■■□□□ 1.14
CLN3-213ENST00000565047 PRAG1Q86YV5 1406 aa22.18■■□□□ 1.14
CLN3-213ENST00000565047 CADPS2Q86UW7 1296 aa22.18■■□□□ 1.14
CLN3-213ENST00000565047 DCCP43146 1447 aa22.16■■□□□ 1.14
CLN3-213ENST00000565047 ADGRF5Q8IZF2 1346 aa22.14■■□□□ 1.14
CLN3-213ENST00000565047 C14orf37Q86TY3 774 aa22.14■■□□□ 1.13
CLN3-213ENST00000565047 SOCS7O14512 581 aa22.13■■□□□ 1.13
CLN3-213ENST00000565047 ATF3P18847 181 aa22.13■■□□□ 1.13
CLN3-213ENST00000565047 PTCH1Q13635 1447 aa22.13■■□□□ 1.13
CLN3-213ENST00000565047 IFT172Q9UG01 1749 aa22.12■■□□□ 1.13
CLN3-213ENST00000565047 ROBO2Q9HCK4 1378 aa22.12■■□□□ 1.13
CLN3-213ENST00000565047 HRCP23327 699 aa22.11■■□□□ 1.13
CLN3-213ENST00000565047 MST1RQ04912 1400 aa22.11■■□□□ 1.13
CLN3-213ENST00000565047 ADGRL3Q9HAR2 1447 aa22.11■■□□□ 1.13
CLN3-213ENST00000565047 COL16A1Q07092 1604 aaPredicted RBP22.1■■□□□ 1.13
CLN3-213ENST00000565047 RGL3Q3MIN7 710 aa22.1■■□□□ 1.13
CLN3-213ENST00000565047 BRINP3Q76B58 766 aa22.1■■□□□ 1.13
CLN3-213ENST00000565047 RGS17Q9UGC6 210 aaPredicted RBP22.1■■□□□ 1.13
CLN3-213ENST00000565047 ANKRD30BQ9BXX2 1392 aa22.1■■□□□ 1.13
CLN3-213ENST00000565047 PHLPP1O60346 1717 aa22.09■■□□□ 1.13
CLN3-213ENST00000565047 AHDC1Q5TGY3 1603 aaPredicted RBP22.09■■□□□ 1.13
CLN3-213ENST00000565047 NALCNQ8IZF0 1738 aa22.08■■□□□ 1.12
CLN3-213ENST00000565047 PIK3C2GO75747 1445 aa22.06■■□□□ 1.12
CLN3-213ENST00000565047 ASXL1Q8IXJ9 1541 aa22.05■■□□□ 1.12
CLN3-213ENST00000565047 NRXN1Q9ULB1 1477 aa22.04■■□□□ 1.12
CLN3-213ENST00000565047 JCADQ9P266 1359 aa22.04■■□□□ 1.12
CLN3-213ENST00000565047 TECPR2O15040 1411 aa22.03■■□□□ 1.12
CLN3-213ENST00000565047 PHF23Q9BUL5 403 aaPredicted RBP22.01■■□□□ 1.11
CLN3-213ENST00000565047 C1orf167Q5SNV9 1468 aa22■■□□□ 1.11
CLN3-213ENST00000565047 LRPPRCP42704 1394 aaKnown RBP21.99■■□□□ 1.11
CLN3-213ENST00000565047 ABCC11Q96J66 1382 aa21.99■■□□□ 1.11
CLN3-213ENST00000565047 MYOM2P54296 1465 aa21.99■■□□□ 1.11
CLN3-213ENST00000565047 C14orf93Q9H972 538 aaKnown RBP21.99■■□□□ 1.11
CLN3-213ENST00000565047 NHSL1Q5SYE7 1610 aa21.98■■□□□ 1.11
CLN3-213ENST00000565047 TMEM132EQ6IEE7 984 aa21.98■■□□□ 1.11
CLN3-213ENST00000565047 LRP6O75581 1613 aa21.95■■□□□ 1.1
CLN3-213ENST00000565047 SHPRHQ149N8 1683 aa21.95■■□□□ 1.1
CLN3-213ENST00000565047 SPATA31A6Q5VVP1 1343 aa21.95■■□□□ 1.1
CLN3-213ENST00000565047 LAMC1P11047 1609 aa21.95■■□□□ 1.1
CLN3-213ENST00000565047 WAPLQ7Z5K2 1190 aa21.94■■□□□ 1.1
CLN3-213ENST00000565047 DDX17Q92841 729 aaKnown RBP21.94■■□□□ 1.1
CLN3-213ENST00000565047 YTHDC2Q9H6S0 1430 aaKnown RBP21.94■■□□□ 1.1
CLN3-213ENST00000565047 KNDC1Q76NI1 1749 aa21.94■■□□□ 1.1
CLN3-213ENST00000565047 CFAP70Q5T0N1 1121 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms