RNA–Protein interactions for RNA: ENST00000561128.1

CHRNA3-208, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-208ENST00000561128 NWD1Q149M9 1564 aa19.21■□□□□ 0.67
CHRNA3-208ENST00000561128 EID1Q9Y6B2 187 aa19.2■□□□□ 0.66
CHRNA3-208ENST00000561128 UBAP1LF5GYI3 381 aa19.19■□□□□ 0.66
CHRNA3-208ENST00000561128 SLC26A8Q96RN1 970 aa19.19■□□□□ 0.66
CHRNA3-208ENST00000561128 NRXN3Q9Y4C0 1643 aa19.18■□□□□ 0.66
CHRNA3-208ENST00000561128 NUTM2DQ5VT03 806 aaPredicted RBP19.18■□□□□ 0.66
CHRNA3-208ENST00000561128 CHGAP10645 457 aaKnown RBP19.17■□□□□ 0.66
CHRNA3-208ENST00000561128 PLEKHG1Q9ULL1 1385 aa19.17■□□□□ 0.66
CHRNA3-208ENST00000561128 ADAMTS13Q76LX8 1427 aa19.17■□□□□ 0.66
CHRNA3-208ENST00000561128 NEXMIFQ5QGS0 1516 aa19.15■□□□□ 0.66
CHRNA3-208ENST00000561128 CHD2O14647 1828 aaKnown RBP19.12■□□□□ 0.65
CHRNA3-208ENST00000561128 FOXD1Q16676 465 aa19.12■□□□□ 0.65
CHRNA3-208ENST00000561128 TRIM52Q96A61 297 aa19.12■□□□□ 0.65
CHRNA3-208ENST00000561128 RBM33Q96EV2 1170 aaKnown RBP19.12■□□□□ 0.65
CHRNA3-208ENST00000561128 DIP2AQ14689 1571 aa19.1■□□□□ 0.65
CHRNA3-208ENST00000561128 NKTRP30414 1462 aaKnown RBP19.09■□□□□ 0.65
CHRNA3-208ENST00000561128 PIP4K2BP78356 416 aa19.09■□□□□ 0.65
CHRNA3-208ENST00000561128 SETBP1Q9Y6X0 1596 aa19.09■□□□□ 0.65
CHRNA3-208ENST00000561128 KIF1BO60333 1816 aa19.09■□□□□ 0.65
CHRNA3-208ENST00000561128 PTPRUQ92729 1446 aa19.08■□□□□ 0.65
CHRNA3-208ENST00000561128 TMEM94Q12767 1356 aa19.08■□□□□ 0.65
CHRNA3-208ENST00000561128 PPP1R15AO75807 674 aaPredicted RBP19.08■□□□□ 0.64
CHRNA3-208ENST00000561128 SLC4A1APQ9BWU0 796 aaKnown RBP19.07■□□□□ 0.64
CHRNA3-208ENST00000561128 SCAF1Q9H7N4 1312 aaKnown RBP19.06■□□□□ 0.64
CHRNA3-208ENST00000561128 XRN1Q8IZH2 1706 aaKnown RBP19.06■□□□□ 0.64
CHRNA3-208ENST00000561128 KCNA6P17658 529 aa19.06■□□□□ 0.64
CHRNA3-208ENST00000561128 SETD1AO15047 1707 aaKnown RBP19.05■□□□□ 0.64
CHRNA3-208ENST00000561128 BCANQ96GW7 911 aa19.05■□□□□ 0.64
CHRNA3-208ENST00000561128 HSPA1LP34931 641 aa19.04■□□□□ 0.64
CHRNA3-208ENST00000561128 SETD5Q9C0A6 1442 aa19.04■□□□□ 0.64
CHRNA3-208ENST00000561128 PPLO60437 1756 aa19.03■□□□□ 0.64
CHRNA3-208ENST00000561128 RAB3GAP2Q9H2M9 1393 aa19.03■□□□□ 0.64
CHRNA3-208ENST00000561128 TOM1O60784 492 aa19.02■□□□□ 0.64
CHRNA3-208ENST00000561128 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.02■□□□□ 0.64
CHRNA3-208ENST00000561128 TBX22Q9Y458 520 aa19.01■□□□□ 0.63
CHRNA3-208ENST00000561128 ZNF326Q5BKZ1 582 aaKnown RBP19■□□□□ 0.63
CHRNA3-208ENST00000561128 PROSER2Q86WR7 435 aaPredicted RBP19■□□□□ 0.63
CHRNA3-208ENST00000561128 METP08581 1390 aa19■□□□□ 0.63
CHRNA3-208ENST00000561128 IFT172Q9UG01 1749 aa19■□□□□ 0.63
CHRNA3-208ENST00000561128 MPHOSPH9Q99550 1183 aa18.99■□□□□ 0.63
CHRNA3-208ENST00000561128 SPATA31E1Q6ZUB1 1445 aa18.98■□□□□ 0.63
CHRNA3-208ENST00000561128 ROBO1Q9Y6N7 1651 aa18.98■□□□□ 0.63
CHRNA3-208ENST00000561128 MED1Q15648 1581 aaPredicted RBP18.96■□□□□ 0.63
CHRNA3-208ENST00000561128 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.95■□□□□ 0.62
CHRNA3-208ENST00000561128 HDGFP51858 240 aaKnown RBP18.95■□□□□ 0.62
CHRNA3-208ENST00000561128 PIK3R4Q99570 1358 aa18.94■□□□□ 0.62
CHRNA3-208ENST00000561128 CCDC144AA2RUR9 1427 aa18.94■□□□□ 0.62
CHRNA3-208ENST00000561128 NALCNQ8IZF0 1738 aa18.93■□□□□ 0.62
CHRNA3-208ENST00000561128 ASXL1Q8IXJ9 1541 aa18.93■□□□□ 0.62
CHRNA3-208ENST00000561128 DISP3Q9P2K9 1392 aa18.93■□□□□ 0.62
CHRNA3-208ENST00000561128 AMOTL2Q9Y2J4 779 aa18.91■□□□□ 0.62
CHRNA3-208ENST00000561128 MSH6P52701 1360 aa18.91■□□□□ 0.62
CHRNA3-208ENST00000561128 FAM135BQ49AJ0 1406 aa18.89■□□□□ 0.61
CHRNA3-208ENST00000561128 ILDR2Q71H61 639 aa18.88■□□□□ 0.61
CHRNA3-208ENST00000561128 ADGRF5Q8IZF2 1346 aa18.88■□□□□ 0.61
CHRNA3-208ENST00000561128 NCOA3Q9Y6Q9 1424 aa18.86■□□□□ 0.61
CHRNA3-208ENST00000561128 ROBO2Q9HCK4 1378 aa18.85■□□□□ 0.61
CHRNA3-208ENST00000561128 RGL3Q3MIN7 710 aa18.85■□□□□ 0.61
CHRNA3-208ENST00000561128 COL16A1Q07092 1604 aaPredicted RBP18.85■□□□□ 0.61
CHRNA3-208ENST00000561128 PIK3C2GO75747 1445 aa18.83■□□□□ 0.61
CHRNA3-208ENST00000561128 PRAG1Q86YV5 1406 aa18.83■□□□□ 0.61
CHRNA3-208ENST00000561128 PHLPP1O60346 1717 aa18.83■□□□□ 0.61
CHRNA3-208ENST00000561128 RPGRIP1LQ68CZ1 1315 aa18.83■□□□□ 0.61
CHRNA3-208ENST00000561128 PTCH1Q13635 1447 aa18.83■□□□□ 0.6
CHRNA3-208ENST00000561128 ADGRL3Q9HAR2 1447 aa18.83■□□□□ 0.6
CHRNA3-208ENST00000561128 ANKRD30BQ9BXX2 1392 aa18.82■□□□□ 0.6
CHRNA3-208ENST00000561128 VGFO15240 615 aaPredicted RBP18.81■□□□□ 0.6
CHRNA3-208ENST00000561128 SLAIN2Q9P270 581 aa18.81■□□□□ 0.6
CHRNA3-208ENST00000561128 NRXN1Q9ULB1 1477 aa18.81■□□□□ 0.6
CHRNA3-208ENST00000561128 MST1RQ04912 1400 aa18.81■□□□□ 0.6
CHRNA3-208ENST00000561128 C14orf37Q86TY3 774 aa18.8■□□□□ 0.6
CHRNA3-208ENST00000561128 DCCP43146 1447 aa18.8■□□□□ 0.6
CHRNA3-208ENST00000561128 MYOM2P54296 1465 aa18.79■□□□□ 0.6
CHRNA3-208ENST00000561128 AHDC1Q5TGY3 1603 aaPredicted RBP18.79■□□□□ 0.6
CHRNA3-208ENST00000561128 KNDC1Q76NI1 1749 aa18.78■□□□□ 0.6
CHRNA3-208ENST00000561128 C19orf44Q9H6X5 657 aa18.78■□□□□ 0.6
CHRNA3-208ENST00000561128 NHSL1Q5SYE7 1610 aa18.75■□□□□ 0.59
CHRNA3-208ENST00000561128 PLEKHH1Q9ULM0 1364 aa18.74■□□□□ 0.59
CHRNA3-208ENST00000561128 BRINP3Q76B58 766 aa18.74■□□□□ 0.59
CHRNA3-208ENST00000561128 TECPR2O15040 1411 aa18.74■□□□□ 0.59
CHRNA3-208ENST00000561128 TMEM132EQ6IEE7 984 aa18.73■□□□□ 0.59
CHRNA3-208ENST00000561128 CADPS2Q86UW7 1296 aa18.73■□□□□ 0.59
CHRNA3-208ENST00000561128 LAMC1P11047 1609 aa18.73■□□□□ 0.59
CHRNA3-208ENST00000561128 ATF3P18847 181 aa18.72■□□□□ 0.59
CHRNA3-208ENST00000561128 CDC42BPGQ6DT37 1551 aa18.72■□□□□ 0.59
CHRNA3-208ENST00000561128 LRP6O75581 1613 aa18.71■□□□□ 0.59
CHRNA3-208ENST00000561128 LRPPRCP42704 1394 aaKnown RBP18.71■□□□□ 0.59
CHRNA3-208ENST00000561128 ADGRB1O14514 1584 aa18.71■□□□□ 0.59
CHRNA3-208ENST00000561128 ACIN1Q9UKV3 1341 aaKnown RBP18.71■□□□□ 0.59
CHRNA3-208ENST00000561128 HRCP23327 699 aa18.7■□□□□ 0.58
CHRNA3-208ENST00000561128 DDX17Q92841 729 aaKnown RBP18.7■□□□□ 0.58
CHRNA3-208ENST00000561128 C1orf167Q5SNV9 1468 aa18.7■□□□□ 0.58
CHRNA3-208ENST00000561128 DHX57Q6P158 1386 aaKnown RBP18.69■□□□□ 0.58
CHRNA3-208ENST00000561128 YTHDC2Q9H6S0 1430 aaKnown RBP18.69■□□□□ 0.58
CHRNA3-208ENST00000561128 STK26Q9P289 416 aa18.69■□□□□ 0.58
CHRNA3-208ENST00000561128 SHPRHQ149N8 1683 aa18.69■□□□□ 0.58
CHRNA3-208ENST00000561128 CFAP70Q5T0N1 1121 aa18.68■□□□□ 0.58
CHRNA3-208ENST00000561128 WAPLQ7Z5K2 1190 aa18.67■□□□□ 0.58
CHRNA3-208ENST00000561128 RGS17Q9UGC6 210 aaPredicted RBP18.67■□□□□ 0.58
CHRNA3-208ENST00000561128 ABCC11Q96J66 1382 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms