RNA–Protein interactions for RNA: ENST00000555241.5

SYNE2-218, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 665 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-218ENST00000555241 PLEKHG1Q9ULL1 1385 aa32.4■■■□□ 2.78
SYNE2-218ENST00000555241 TRPM2O94759 1503 aa32.39■■■□□ 2.78
SYNE2-218ENST00000555241 TOM1O60784 492 aa32.37■■■□□ 2.77
SYNE2-218ENST00000555241 PPP1R15AO75807 674 aaPredicted RBP32.37■■■□□ 2.77
SYNE2-218ENST00000555241 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.37■■■□□ 2.77
SYNE2-218ENST00000555241 TRIM52Q96A61 297 aa32.37■■■□□ 2.77
SYNE2-218ENST00000555241 CLTCL1P53675 1640 aa32.37■■■□□ 2.77
SYNE2-218ENST00000555241 KIF1BO60333 1816 aa32.36■■■□□ 2.77
SYNE2-218ENST00000555241 SLC26A8Q96RN1 970 aa32.36■■■□□ 2.77
SYNE2-218ENST00000555241 NWD1Q149M9 1564 aa32.35■■■□□ 2.77
SYNE2-218ENST00000555241 CHD2O14647 1828 aaKnown RBP32.33■■■□□ 2.77
SYNE2-218ENST00000555241 BCANQ96GW7 911 aa32.33■■■□□ 2.77
SYNE2-218ENST00000555241 ALKQ9UM73 1620 aa32.32■■■□□ 2.76
SYNE2-218ENST00000555241 KCNA6P17658 529 aa32.31■■■□□ 2.76
SYNE2-218ENST00000555241 DIP2AQ14689 1571 aa32.29■■■□□ 2.76
SYNE2-218ENST00000555241 SLC4A1APQ9BWU0 796 aaKnown RBP32.28■■■□□ 2.76
SYNE2-218ENST00000555241 NKTRP30414 1462 aaKnown RBP32.28■■■□□ 2.76
SYNE2-218ENST00000555241 PIP4K2BP78356 416 aa32.24■■■□□ 2.75
SYNE2-218ENST00000555241 NUTM2DQ5VT03 806 aaPredicted RBP32.24■■■□□ 2.75
SYNE2-218ENST00000555241 ADAMTS13Q76LX8 1427 aa32.24■■■□□ 2.75
SYNE2-218ENST00000555241 SCAF1Q9H7N4 1312 aaKnown RBP32.24■■■□□ 2.75
SYNE2-218ENST00000555241 SENP3Q9H4L4 574 aaPredicted RBP32.23■■■□□ 2.75
SYNE2-218ENST00000555241 TBX22Q9Y458 520 aa32.23■■■□□ 2.75
SYNE2-218ENST00000555241 ZNF326Q5BKZ1 582 aaKnown RBP32.2■■■□□ 2.75
SYNE2-218ENST00000555241 NEXMIFQ5QGS0 1516 aa32.2■■■□□ 2.74
SYNE2-218ENST00000555241 TMEM94Q12767 1356 aa32.19■■■□□ 2.74
SYNE2-218ENST00000555241 NRXN3Q9Y4C0 1643 aa32.18■■■□□ 2.74
SYNE2-218ENST00000555241 SETBP1Q9Y6X0 1596 aa32.18■■■□□ 2.74
SYNE2-218ENST00000555241 ACIN1Q9UKV3 1341 aaKnown RBP32.18■■■□□ 2.74
SYNE2-218ENST00000555241 PIK3R4Q99570 1358 aa32.17■■■□□ 2.74
SYNE2-218ENST00000555241 SETD5Q9C0A6 1442 aa32.17■■■□□ 2.74
SYNE2-218ENST00000555241 PROSER2Q86WR7 435 aaPredicted RBP32.16■■■□□ 2.74
SYNE2-218ENST00000555241 MPHOSPH9Q99550 1183 aa32.11■■■□□ 2.73
SYNE2-218ENST00000555241 HSPA1LP34931 641 aa32.1■■■□□ 2.73
SYNE2-218ENST00000555241 PPLO60437 1756 aa32.09■■■□□ 2.73
SYNE2-218ENST00000555241 FOXD1Q16676 465 aa32.08■■■□□ 2.73
SYNE2-218ENST00000555241 RBM33Q96EV2 1170 aaKnown RBP32.06■■■□□ 2.72
SYNE2-218ENST00000555241 NCOA3Q9Y6Q9 1424 aa32.05■■■□□ 2.72
SYNE2-218ENST00000555241 XRN1Q8IZH2 1706 aaKnown RBP32.05■■■□□ 2.72
SYNE2-218ENST00000555241 CCDC144AA2RUR9 1427 aa32.04■■■□□ 2.72
SYNE2-218ENST00000555241 MSH6P52701 1360 aa32.04■■■□□ 2.72
SYNE2-218ENST00000555241 RAB3GAP2Q9H2M9 1393 aa32.04■■■□□ 2.72
SYNE2-218ENST00000555241 RPGRIP1LQ68CZ1 1315 aa32.02■■■□□ 2.72
SYNE2-218ENST00000555241 PTPRUQ92729 1446 aa32.02■■■□□ 2.72
SYNE2-218ENST00000555241 SETD1AO15047 1707 aaKnown RBP32■■■□□ 2.71
SYNE2-218ENST00000555241 DISP3Q9P2K9 1392 aa31.99■■■□□ 2.71
SYNE2-218ENST00000555241 VGFO15240 615 aaPredicted RBP31.99■■■□□ 2.71
SYNE2-218ENST00000555241 AMOTL2Q9Y2J4 779 aa31.99■■■□□ 2.71
SYNE2-218ENST00000555241 FAM135BQ49AJ0 1406 aa31.99■■■□□ 2.71
SYNE2-218ENST00000555241 ROBO1Q9Y6N7 1651 aa31.98■■■□□ 2.71
SYNE2-218ENST00000555241 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.97■■■□□ 2.71
SYNE2-218ENST00000555241 IFT172Q9UG01 1749 aa31.97■■■□□ 2.71
SYNE2-218ENST00000555241 METP08581 1390 aa31.95■■■□□ 2.71
SYNE2-218ENST00000555241 SPATA31E1Q6ZUB1 1445 aa31.94■■■□□ 2.7
SYNE2-218ENST00000555241 C14orf37Q86TY3 774 aa31.91■■■□□ 2.7
SYNE2-218ENST00000555241 MED1Q15648 1581 aaPredicted RBP31.87■■■□□ 2.69
SYNE2-218ENST00000555241 C19orf44Q9H6X5 657 aa31.87■■■□□ 2.69
SYNE2-218ENST00000555241 SLAIN2Q9P270 581 aa31.87■■■□□ 2.69
SYNE2-218ENST00000555241 HRCP23327 699 aa31.86■■■□□ 2.69
SYNE2-218ENST00000555241 ANKRD30BQ9BXX2 1392 aa31.84■■■□□ 2.69
SYNE2-218ENST00000555241 RGL3Q3MIN7 710 aa31.84■■■□□ 2.69
SYNE2-218ENST00000555241 CADPS2Q86UW7 1296 aa31.84■■■□□ 2.69
SYNE2-218ENST00000555241 DCCP43146 1447 aa31.83■■■□□ 2.69
SYNE2-218ENST00000555241 ATF3P18847 181 aa31.81■■■□□ 2.68
SYNE2-218ENST00000555241 NALCNQ8IZF0 1738 aa31.8■■■□□ 2.68
SYNE2-218ENST00000555241 PTCH1Q13635 1447 aa31.8■■■□□ 2.68
SYNE2-218ENST00000555241 PRAG1Q86YV5 1406 aa31.8■■■□□ 2.68
SYNE2-218ENST00000555241 PHLPP1O60346 1717 aa31.8■■■□□ 2.68
SYNE2-218ENST00000555241 ADGRF5Q8IZF2 1346 aa31.77■■■□□ 2.68
SYNE2-218ENST00000555241 ADGRL3Q9HAR2 1447 aa31.76■■■□□ 2.68
SYNE2-218ENST00000555241 PIK3C2GO75747 1445 aa31.74■■■□□ 2.67
SYNE2-218ENST00000555241 ROBO2Q9HCK4 1378 aa31.7■■■□□ 2.67
SYNE2-218ENST00000555241 MYOM2P54296 1465 aa31.7■■■□□ 2.66
SYNE2-218ENST00000555241 COL16A1Q07092 1604 aaPredicted RBP31.69■■■□□ 2.66
SYNE2-218ENST00000555241 AHDC1Q5TGY3 1603 aaPredicted RBP31.69■■■□□ 2.66
SYNE2-218ENST00000555241 KNDC1Q76NI1 1749 aa31.69■■■□□ 2.66
SYNE2-218ENST00000555241 LAMC1P11047 1609 aa31.68■■■□□ 2.66
SYNE2-218ENST00000555241 MST1RQ04912 1400 aa31.68■■■□□ 2.66
SYNE2-218ENST00000555241 ILDR2Q71H61 639 aa31.68■■■□□ 2.66
SYNE2-218ENST00000555241 NRXN1Q9ULB1 1477 aa31.67■■■□□ 2.66
SYNE2-218ENST00000555241 ASXL1Q8IXJ9 1541 aa31.66■■■□□ 2.66
SYNE2-218ENST00000555241 TECPR2O15040 1411 aa31.63■■■□□ 2.65
SYNE2-218ENST00000555241 BRINP3Q76B58 766 aa31.62■■■□□ 2.65
SYNE2-218ENST00000555241 NHSL1Q5SYE7 1610 aa31.61■■■□□ 2.65
SYNE2-218ENST00000555241 LRPPRCP42704 1394 aaKnown RBP31.61■■■□□ 2.65
SYNE2-218ENST00000555241 PHF23Q9BUL5 403 aaPredicted RBP31.59■■■□□ 2.65
SYNE2-218ENST00000555241 JCADQ9P266 1359 aa31.58■■■□□ 2.65
SYNE2-218ENST00000555241 ABCC11Q96J66 1382 aa31.57■■■□□ 2.64
SYNE2-218ENST00000555241 C14orf93Q9H972 538 aaKnown RBP31.57■■■□□ 2.64
SYNE2-218ENST00000555241 SHPRHQ149N8 1683 aa31.56■■■□□ 2.64
SYNE2-218ENST00000555241 YTHDC2Q9H6S0 1430 aaKnown RBP31.56■■■□□ 2.64
SYNE2-218ENST00000555241 CDC42BPGQ6DT37 1551 aa31.56■■■□□ 2.64
SYNE2-218ENST00000555241 TMEM132EQ6IEE7 984 aa31.55■■■□□ 2.64
SYNE2-218ENST00000555241 STK26Q9P289 416 aa31.54■■■□□ 2.64
SYNE2-218ENST00000555241 C1orf167Q5SNV9 1468 aa31.53■■■□□ 2.64
SYNE2-218ENST00000555241 CFAP70Q5T0N1 1121 aa31.5■■■□□ 2.63
SYNE2-218ENST00000555241 DHX57Q6P158 1386 aaKnown RBP31.48■■■□□ 2.63
SYNE2-218ENST00000555241 STAC3Q96MF2 364 aa31.48■■■□□ 2.63
SYNE2-218ENST00000555241 WAPLQ7Z5K2 1190 aa31.46■■■□□ 2.63
SYNE2-218ENST00000555241 DCAF11Q8TEB1 546 aa31.46■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms