RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PLEKHG1Q9ULL1 1385 aa21.33■■□□□ 1
USP28-209ENST00000540925 TRIM52Q96A61 297 aa21.32■■□□□ 1
USP28-209ENST00000540925 LRRC7Q96NW7 1537 aa21.32■■□□□ 1
USP28-209ENST00000540925 SETD5Q9C0A6 1442 aa21.29■■□□□ 1
USP28-209ENST00000540925 SLC4A1APQ9BWU0 796 aaKnown RBP21.29■■□□□ 1
USP28-209ENST00000540925 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.28■■□□□ 1
USP28-209ENST00000540925 NWD1Q149M9 1564 aa21.27■■□□□ 1
USP28-209ENST00000540925 ALKQ9UM73 1620 aa21.27■■□□□ 1
USP28-209ENST00000540925 CHGAP10645 457 aaKnown RBP21.27■■□□□ 1
USP28-209ENST00000540925 HDGFP51858 240 aaKnown RBP21.27■■□□□ 1
USP28-209ENST00000540925 SLC26A8Q96RN1 970 aa21.26■□□□□ 0.99
USP28-209ENST00000540925 ADAMTS13Q76LX8 1427 aa21.26■□□□□ 0.99
USP28-209ENST00000540925 ACIN1Q9UKV3 1341 aaKnown RBP21.25■□□□□ 0.99
USP28-209ENST00000540925 XIRP1Q702N8 1843 aaKnown RBP21.23■□□□□ 0.99
USP28-209ENST00000540925 KCNA6P17658 529 aa21.23■□□□□ 0.99
USP28-209ENST00000540925 MPHOSPH9Q99550 1183 aa21.23■□□□□ 0.99
USP28-209ENST00000540925 NEXMIFQ5QGS0 1516 aa21.23■□□□□ 0.99
USP28-209ENST00000540925 DIP2AQ14689 1571 aa21.23■□□□□ 0.99
USP28-209ENST00000540925 RAB3GAP2Q9H2M9 1393 aa21.23■□□□□ 0.99
USP28-209ENST00000540925 UBAP1LF5GYI3 381 aa21.22■□□□□ 0.99
USP28-209ENST00000540925 TBX22Q9Y458 520 aa21.22■□□□□ 0.99
USP28-209ENST00000540925 KIF1BO60333 1816 aa21.22■□□□□ 0.99
USP28-209ENST00000540925 NRXN3Q9Y4C0 1643 aa21.22■□□□□ 0.99
USP28-209ENST00000540925 NKTRP30414 1462 aaKnown RBP21.21■□□□□ 0.99
USP28-209ENST00000540925 PPP1R15AO75807 674 aaPredicted RBP21.21■□□□□ 0.99
USP28-209ENST00000540925 SETBP1Q9Y6X0 1596 aa21.21■□□□□ 0.99
USP28-209ENST00000540925 CHD2O14647 1828 aaKnown RBP21.2■□□□□ 0.98
USP28-209ENST00000540925 FOXD1Q16676 465 aa21.2■□□□□ 0.98
USP28-209ENST00000540925 NUTM2DQ5VT03 806 aaPredicted RBP21.2■□□□□ 0.98
USP28-209ENST00000540925 PIK3R4Q99570 1358 aa21.17■□□□□ 0.98
USP28-209ENST00000540925 TMEM94Q12767 1356 aa21.15■□□□□ 0.98
USP28-209ENST00000540925 TOM1O60784 492 aa21.15■□□□□ 0.98
USP28-209ENST00000540925 HRCP23327 699 aa21.15■□□□□ 0.98
USP28-209ENST00000540925 SPATA31E1Q6ZUB1 1445 aa21.14■□□□□ 0.98
USP28-209ENST00000540925 ZNF326Q5BKZ1 582 aaKnown RBP21.14■□□□□ 0.97
USP28-209ENST00000540925 BCANQ96GW7 911 aa21.14■□□□□ 0.97
USP28-209ENST00000540925 SENP3Q9H4L4 574 aaPredicted RBP21.14■□□□□ 0.97
USP28-209ENST00000540925 CCDC144AA2RUR9 1427 aa21.12■□□□□ 0.97
USP28-209ENST00000540925 PTPRUQ92729 1446 aa21.12■□□□□ 0.97
USP28-209ENST00000540925 RPGRIP1LQ68CZ1 1315 aa21.12■□□□□ 0.97
USP28-209ENST00000540925 PPLO60437 1756 aa21.11■□□□□ 0.97
USP28-209ENST00000540925 XRN1Q8IZH2 1706 aaKnown RBP21.09■□□□□ 0.97
USP28-209ENST00000540925 PROSER2Q86WR7 435 aaPredicted RBP21.09■□□□□ 0.97
USP28-209ENST00000540925 SETD1AO15047 1707 aaKnown RBP21.09■□□□□ 0.97
USP28-209ENST00000540925 NCOA3Q9Y6Q9 1424 aa21.08■□□□□ 0.97
USP28-209ENST00000540925 METP08581 1390 aa21.08■□□□□ 0.96
USP28-209ENST00000540925 IFT172Q9UG01 1749 aa21.07■□□□□ 0.96
USP28-209ENST00000540925 VGFO15240 615 aaPredicted RBP21.06■□□□□ 0.96
USP28-209ENST00000540925 RBM33Q96EV2 1170 aaKnown RBP21.06■□□□□ 0.96
USP28-209ENST00000540925 PIP4K2BP78356 416 aa21.05■□□□□ 0.96
USP28-209ENST00000540925 ANKRD30BQ9BXX2 1392 aa21.04■□□□□ 0.96
USP28-209ENST00000540925 AMOTL2Q9Y2J4 779 aa21.03■□□□□ 0.96
USP28-209ENST00000540925 PRAG1Q86YV5 1406 aa21.02■□□□□ 0.96
USP28-209ENST00000540925 HSPA1LP34931 641 aa21.01■□□□□ 0.95
USP28-209ENST00000540925 FAM135BQ49AJ0 1406 aa21.01■□□□□ 0.95
USP28-209ENST00000540925 MSH6P52701 1360 aa20.99■□□□□ 0.95
USP28-209ENST00000540925 ADGRF5Q8IZF2 1346 aa20.99■□□□□ 0.95
USP28-209ENST00000540925 SCAF1Q9H7N4 1312 aaKnown RBP20.99■□□□□ 0.95
USP28-209ENST00000540925 NRXN1Q9ULB1 1477 aa20.97■□□□□ 0.95
USP28-209ENST00000540925 RGL3Q3MIN7 710 aa20.97■□□□□ 0.95
USP28-209ENST00000540925 PIK3C2GO75747 1445 aa20.96■□□□□ 0.95
USP28-209ENST00000540925 SIPA1L2Q9P2F8 1722 aaPredicted RBP20.96■□□□□ 0.95
USP28-209ENST00000540925 PTCH1Q13635 1447 aa20.95■□□□□ 0.95
USP28-209ENST00000540925 MYOM2P54296 1465 aa20.94■□□□□ 0.94
USP28-209ENST00000540925 C19orf44Q9H6X5 657 aa20.94■□□□□ 0.94
USP28-209ENST00000540925 MED1Q15648 1581 aaPredicted RBP20.93■□□□□ 0.94
USP28-209ENST00000540925 ROBO1Q9Y6N7 1651 aa20.93■□□□□ 0.94
USP28-209ENST00000540925 DCCP43146 1447 aa20.93■□□□□ 0.94
USP28-209ENST00000540925 ASXL1Q8IXJ9 1541 aa20.93■□□□□ 0.94
USP28-209ENST00000540925 SLAIN2Q9P270 581 aa20.92■□□□□ 0.94
USP28-209ENST00000540925 ROBO2Q9HCK4 1378 aa20.91■□□□□ 0.94
USP28-209ENST00000540925 ADGRL3Q9HAR2 1447 aa20.9■□□□□ 0.94
USP28-209ENST00000540925 TECPR2O15040 1411 aa20.89■□□□□ 0.94
USP28-209ENST00000540925 NALCNQ8IZF0 1738 aa20.89■□□□□ 0.93
USP28-209ENST00000540925 CADPS2Q86UW7 1296 aa20.88■□□□□ 0.93
USP28-209ENST00000540925 C14orf37Q86TY3 774 aa20.86■□□□□ 0.93
USP28-209ENST00000540925 C14orf93Q9H972 538 aaKnown RBP20.85■□□□□ 0.93
USP28-209ENST00000540925 MST1RQ04912 1400 aa20.85■□□□□ 0.93
USP28-209ENST00000540925 LRPPRCP42704 1394 aaKnown RBP20.85■□□□□ 0.93
USP28-209ENST00000540925 ATF3P18847 181 aa20.84■□□□□ 0.93
USP28-209ENST00000540925 LAMC1P11047 1609 aa20.84■□□□□ 0.93
USP28-209ENST00000540925 KNDC1Q76NI1 1749 aa20.84■□□□□ 0.93
USP28-209ENST00000540925 DHX57Q6P158 1386 aaKnown RBP20.84■□□□□ 0.93
USP28-209ENST00000540925 ABCC11Q96J66 1382 aa20.84■□□□□ 0.93
USP28-209ENST00000540925 AHDC1Q5TGY3 1603 aaPredicted RBP20.81■□□□□ 0.92
USP28-209ENST00000540925 YTHDC2Q9H6S0 1430 aaKnown RBP20.8■□□□□ 0.92
USP28-209ENST00000540925 TMEM132EQ6IEE7 984 aa20.8■□□□□ 0.92
USP28-209ENST00000540925 COL16A1Q07092 1604 aaPredicted RBP20.79■□□□□ 0.92
USP28-209ENST00000540925 CFAP70Q5T0N1 1121 aa20.79■□□□□ 0.92
USP28-209ENST00000540925 STAC3Q96MF2 364 aa20.79■□□□□ 0.92
USP28-209ENST00000540925 ADGRB1O14514 1584 aa20.79■□□□□ 0.92
USP28-209ENST00000540925 BRINP3Q76B58 766 aa20.78■□□□□ 0.92
USP28-209ENST00000540925 PHLPP1O60346 1717 aa20.78■□□□□ 0.92
USP28-209ENST00000540925 CDC42BPGQ6DT37 1551 aa20.76■□□□□ 0.91
USP28-209ENST00000540925 DCAF11Q8TEB1 546 aa20.76■□□□□ 0.91
USP28-209ENST00000540925 SIRT1Q96EB6 747 aa20.76■□□□□ 0.91
USP28-209ENST00000540925 C1orf167Q5SNV9 1468 aa20.75■□□□□ 0.91
USP28-209ENST00000540925 PLEKHH1Q9ULM0 1364 aa20.74■□□□□ 0.91
USP28-209ENST00000540925 PHF23Q9BUL5 403 aaPredicted RBP20.74■□□□□ 0.91
USP28-209ENST00000540925 STK26Q9P289 416 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 303.8 ms