RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 PLEKHG1Q9ULL1 1385 aa20.08■□□□□ 0.8
VPS28-211ENST00000530790 SCAF1Q9H7N4 1312 aaKnown RBP20.07■□□□□ 0.8
VPS28-211ENST00000530790 HDGFP51858 240 aaKnown RBP20.07■□□□□ 0.8
VPS28-211ENST00000530790 BCANQ96GW7 911 aa20.06■□□□□ 0.8
VPS28-211ENST00000530790 SLC26A8Q96RN1 970 aa20.05■□□□□ 0.8
VPS28-211ENST00000530790 TRPM2O94759 1503 aa20.04■□□□□ 0.8
VPS28-211ENST00000530790 PIP4K2BP78356 416 aa20.04■□□□□ 0.8
VPS28-211ENST00000530790 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.04■□□□□ 0.8
VPS28-211ENST00000530790 NWD1Q149M9 1564 aa20.04■□□□□ 0.8
VPS28-211ENST00000530790 NKTRP30414 1462 aaKnown RBP20.03■□□□□ 0.8
VPS28-211ENST00000530790 ALKQ9UM73 1620 aa20.02■□□□□ 0.8
VPS28-211ENST00000530790 TRIM52Q96A61 297 aa20.02■□□□□ 0.8
VPS28-211ENST00000530790 DIP2AQ14689 1571 aa20■□□□□ 0.79
VPS28-211ENST00000530790 KCNA6P17658 529 aa20■□□□□ 0.79
VPS28-211ENST00000530790 SENP3Q9H4L4 574 aaPredicted RBP20■□□□□ 0.79
VPS28-211ENST00000530790 CLTCL1P53675 1640 aa20■□□□□ 0.79
VPS28-211ENST00000530790 XIRP1Q702N8 1843 aaKnown RBP19.97■□□□□ 0.79
VPS28-211ENST00000530790 TMEM94Q12767 1356 aa19.97■□□□□ 0.79
VPS28-211ENST00000530790 NUTM2DQ5VT03 806 aaPredicted RBP19.97■□□□□ 0.79
VPS28-211ENST00000530790 SLC4A1APQ9BWU0 796 aaKnown RBP19.96■□□□□ 0.79
VPS28-211ENST00000530790 ADAMTS13Q76LX8 1427 aa19.95■□□□□ 0.78
VPS28-211ENST00000530790 ZNF326Q5BKZ1 582 aaKnown RBP19.95■□□□□ 0.78
VPS28-211ENST00000530790 HSPA1LP34931 641 aa19.94■□□□□ 0.78
VPS28-211ENST00000530790 PROSER2Q86WR7 435 aaPredicted RBP19.94■□□□□ 0.78
VPS28-211ENST00000530790 DISP3Q9P2K9 1392 aa19.94■□□□□ 0.78
VPS28-211ENST00000530790 TBX22Q9Y458 520 aa19.93■□□□□ 0.78
VPS28-211ENST00000530790 CHD2O14647 1828 aaKnown RBP19.92■□□□□ 0.78
VPS28-211ENST00000530790 PIK3R4Q99570 1358 aa19.92■□□□□ 0.78
VPS28-211ENST00000530790 SETBP1Q9Y6X0 1596 aa19.91■□□□□ 0.78
VPS28-211ENST00000530790 KIF1BO60333 1816 aa19.91■□□□□ 0.78
VPS28-211ENST00000530790 NEXMIFQ5QGS0 1516 aa19.91■□□□□ 0.78
VPS28-211ENST00000530790 MSH6P52701 1360 aa19.89■□□□□ 0.77
VPS28-211ENST00000530790 NRXN3Q9Y4C0 1643 aa19.89■□□□□ 0.77
VPS28-211ENST00000530790 RBM33Q96EV2 1170 aaKnown RBP19.88■□□□□ 0.77
VPS28-211ENST00000530790 SETD5Q9C0A6 1442 aa19.85■□□□□ 0.77
VPS28-211ENST00000530790 ACIN1Q9UKV3 1341 aaKnown RBP19.85■□□□□ 0.77
VPS28-211ENST00000530790 CCDC144AA2RUR9 1427 aa19.84■□□□□ 0.77
VPS28-211ENST00000530790 NCOA3Q9Y6Q9 1424 aa19.84■□□□□ 0.77
VPS28-211ENST00000530790 FOXD1Q16676 465 aa19.83■□□□□ 0.77
VPS28-211ENST00000530790 FAM135BQ49AJ0 1406 aa19.83■□□□□ 0.76
VPS28-211ENST00000530790 PTPRUQ92729 1446 aa19.83■□□□□ 0.76
VPS28-211ENST00000530790 XRN1Q8IZH2 1706 aaKnown RBP19.82■□□□□ 0.76
VPS28-211ENST00000530790 MED1Q15648 1581 aaPredicted RBP19.82■□□□□ 0.76
VPS28-211ENST00000530790 C14orf37Q86TY3 774 aa19.81■□□□□ 0.76
VPS28-211ENST00000530790 MPHOSPH9Q99550 1183 aa19.81■□□□□ 0.76
VPS28-211ENST00000530790 ROBO1Q9Y6N7 1651 aa19.81■□□□□ 0.76
VPS28-211ENST00000530790 AMOTL2Q9Y2J4 779 aa19.8■□□□□ 0.76
VPS28-211ENST00000530790 RPGRIP1LQ68CZ1 1315 aa19.79■□□□□ 0.76
VPS28-211ENST00000530790 VGFO15240 615 aaPredicted RBP19.79■□□□□ 0.76
VPS28-211ENST00000530790 METP08581 1390 aa19.79■□□□□ 0.76
VPS28-211ENST00000530790 RAB3GAP2Q9H2M9 1393 aa19.79■□□□□ 0.76
VPS28-211ENST00000530790 PPLO60437 1756 aa19.78■□□□□ 0.76
VPS28-211ENST00000530790 SLAIN2Q9P270 581 aa19.75■□□□□ 0.75
VPS28-211ENST00000530790 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.75■□□□□ 0.75
VPS28-211ENST00000530790 DCCP43146 1447 aa19.74■□□□□ 0.75
VPS28-211ENST00000530790 SPATA31E1Q6ZUB1 1445 aa19.74■□□□□ 0.75
VPS28-211ENST00000530790 SETD1AO15047 1707 aaKnown RBP19.73■□□□□ 0.75
VPS28-211ENST00000530790 ATF3P18847 181 aa19.73■□□□□ 0.75
VPS28-211ENST00000530790 CADPS2Q86UW7 1296 aa19.73■□□□□ 0.75
VPS28-211ENST00000530790 C19orf44Q9H6X5 657 aa19.73■□□□□ 0.75
VPS28-211ENST00000530790 ILDR2Q71H61 639 aa19.71■□□□□ 0.75
VPS28-211ENST00000530790 PTCH1Q13635 1447 aa19.7■□□□□ 0.74
VPS28-211ENST00000530790 IFT172Q9UG01 1749 aa19.7■□□□□ 0.74
VPS28-211ENST00000530790 ANKRD30BQ9BXX2 1392 aa19.7■□□□□ 0.74
VPS28-211ENST00000530790 ADGRL3Q9HAR2 1447 aa19.69■□□□□ 0.74
VPS28-211ENST00000530790 RGL3Q3MIN7 710 aa19.69■□□□□ 0.74
VPS28-211ENST00000530790 PHLPP1O60346 1717 aa19.68■□□□□ 0.74
VPS28-211ENST00000530790 PRAG1Q86YV5 1406 aa19.68■□□□□ 0.74
VPS28-211ENST00000530790 PHF23Q9BUL5 403 aaPredicted RBP19.67■□□□□ 0.74
VPS28-211ENST00000530790 NALCNQ8IZF0 1738 aa19.67■□□□□ 0.74
VPS28-211ENST00000530790 ADGRF5Q8IZF2 1346 aa19.65■□□□□ 0.74
VPS28-211ENST00000530790 AHDC1Q5TGY3 1603 aaPredicted RBP19.65■□□□□ 0.74
VPS28-211ENST00000530790 ROBO2Q9HCK4 1378 aa19.64■□□□□ 0.73
VPS28-211ENST00000530790 PIK3C2GO75747 1445 aa19.64■□□□□ 0.73
VPS28-211ENST00000530790 COL16A1Q07092 1604 aaPredicted RBP19.64■□□□□ 0.73
VPS28-211ENST00000530790 MST1RQ04912 1400 aa19.63■□□□□ 0.73
VPS28-211ENST00000530790 ASXL1Q8IXJ9 1541 aa19.62■□□□□ 0.73
VPS28-211ENST00000530790 MYOM2P54296 1465 aa19.61■□□□□ 0.73
VPS28-211ENST00000530790 HRCP23327 699 aa19.61■□□□□ 0.73
VPS28-211ENST00000530790 JCADQ9P266 1359 aa19.6■□□□□ 0.73
VPS28-211ENST00000530790 BRINP3Q76B58 766 aa19.6■□□□□ 0.73
VPS28-211ENST00000530790 TECPR2O15040 1411 aa19.58■□□□□ 0.72
VPS28-211ENST00000530790 LAMC1P11047 1609 aa19.58■□□□□ 0.72
VPS28-211ENST00000530790 NRXN1Q9ULB1 1477 aa19.57■□□□□ 0.72
VPS28-211ENST00000530790 KNDC1Q76NI1 1749 aa19.56■□□□□ 0.72
VPS28-211ENST00000530790 SOCS7O14512 581 aa19.56■□□□□ 0.72
VPS28-211ENST00000530790 LRPPRCP42704 1394 aaKnown RBP19.56■□□□□ 0.72
VPS28-211ENST00000530790 NHSL1Q5SYE7 1610 aa19.55■□□□□ 0.72
VPS28-211ENST00000530790 CDC42BPGQ6DT37 1551 aa19.55■□□□□ 0.72
VPS28-211ENST00000530790 C1orf167Q5SNV9 1468 aa19.54■□□□□ 0.72
VPS28-211ENST00000530790 SHPRHQ149N8 1683 aa19.53■□□□□ 0.72
VPS28-211ENST00000530790 STK26Q9P289 416 aa19.53■□□□□ 0.72
VPS28-211ENST00000530790 YTHDC2Q9H6S0 1430 aaKnown RBP19.52■□□□□ 0.72
VPS28-211ENST00000530790 ABCC11Q96J66 1382 aa19.52■□□□□ 0.72
VPS28-211ENST00000530790 SPATA31A6Q5VVP1 1343 aa19.51■□□□□ 0.71
VPS28-211ENST00000530790 TMEM132EQ6IEE7 984 aa19.51■□□□□ 0.71
VPS28-211ENST00000530790 C14orf93Q9H972 538 aaKnown RBP19.5■□□□□ 0.71
VPS28-211ENST00000530790 LRP6O75581 1613 aa19.48■□□□□ 0.71
VPS28-211ENST00000530790 DHX57Q6P158 1386 aaKnown RBP19.47■□□□□ 0.71
VPS28-211ENST00000530790 CFAP70Q5T0N1 1121 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms