RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 ABCF1Q8NE71 845 aaKnown RBP eCLIP44.73■■■■■ 4.75
SYNPO-203ENST00000518872 TRPM2O94759 1503 aa44.7■■■■■ 4.75
SYNPO-203ENST00000518872 CHGAP10645 457 aaKnown RBP44.7■■■■■ 4.75
SYNPO-203ENST00000518872 ALKQ9UM73 1620 aa44.7■■■■■ 4.75
SYNPO-203ENST00000518872 XIRP1Q702N8 1843 aaKnown RBP44.69■■■■■ 4.74
SYNPO-203ENST00000518872 NWD1Q149M9 1564 aa44.69■■■■■ 4.74
SYNPO-203ENST00000518872 SLC26A8Q96RN1 970 aa44.68■■■■■ 4.74
SYNPO-203ENST00000518872 KCNA6P17658 529 aa44.67■■■■■ 4.74
SYNPO-203ENST00000518872 PPP1R15AO75807 674 aaPredicted RBP44.65■■■■■ 4.74
SYNPO-203ENST00000518872 CLTCL1P53675 1640 aa44.62■■■■■ 4.73
SYNPO-203ENST00000518872 NKTRP30414 1462 aaKnown RBP44.61■■■■■ 4.73
SYNPO-203ENST00000518872 TRIM52Q96A61 297 aa44.61■■■■■ 4.73
SYNPO-203ENST00000518872 CHD2O14647 1828 aaKnown RBP44.6■■■■■ 4.73
SYNPO-203ENST00000518872 DIP2AQ14689 1571 aa44.59■■■■■ 4.73
SYNPO-203ENST00000518872 BCANQ96GW7 911 aa44.57■■■■■ 4.73
SYNPO-203ENST00000518872 TBX22Q9Y458 520 aa44.57■■■■■ 4.73
SYNPO-203ENST00000518872 KIF1BO60333 1816 aa44.55■■■■■ 4.72
SYNPO-203ENST00000518872 ADAMTS13Q76LX8 1427 aa44.55■■■■■ 4.72
SYNPO-203ENST00000518872 SLC4A1APQ9BWU0 796 aaKnown RBP44.53■■■■■ 4.72
SYNPO-203ENST00000518872 PIP4K2BP78356 416 aa44.51■■■■■ 4.72
SYNPO-203ENST00000518872 TMEM94Q12767 1356 aa44.5■■■■■ 4.71
SYNPO-203ENST00000518872 PIK3R4Q99570 1358 aa44.48■■■■■ 4.71
SYNPO-203ENST00000518872 SCAF1Q9H7N4 1312 aaKnown RBP44.48■■■■■ 4.71
SYNPO-203ENST00000518872 ACIN1Q9UKV3 1341 aaKnown RBP44.47■■■■■ 4.71
SYNPO-203ENST00000518872 NUTM2DQ5VT03 806 aaPredicted RBP44.46■■■■■ 4.71
SYNPO-203ENST00000518872 SETBP1Q9Y6X0 1596 aa44.44■■■■■ 4.71
SYNPO-203ENST00000518872 PROSER2Q86WR7 435 aaPredicted RBP44.43■■■■■ 4.7
SYNPO-203ENST00000518872 NEXMIFQ5QGS0 1516 aa44.43■■■■■ 4.7
SYNPO-203ENST00000518872 NRXN3Q9Y4C0 1643 aa44.42■■■■■ 4.7
SYNPO-203ENST00000518872 HSPA1LP34931 641 aa44.39■■■■■ 4.7
SYNPO-203ENST00000518872 ZNF326Q5BKZ1 582 aaKnown RBP44.39■■■■■ 4.7
SYNPO-203ENST00000518872 SENP3Q9H4L4 574 aaPredicted RBP44.39■■■■■ 4.7
SYNPO-203ENST00000518872 SETD5Q9C0A6 1442 aa44.36■■■■■ 4.69
SYNPO-203ENST00000518872 NCOA3Q9Y6Q9 1424 aa44.34■■■■■ 4.69
SYNPO-203ENST00000518872 MPHOSPH9Q99550 1183 aa44.3■■■■■ 4.68
SYNPO-203ENST00000518872 FAM135BQ49AJ0 1406 aa44.26■■■■■ 4.68
SYNPO-203ENST00000518872 MSH6P52701 1360 aa44.26■■■■■ 4.68
SYNPO-203ENST00000518872 RPGRIP1LQ68CZ1 1315 aa44.25■■■■■ 4.67
SYNPO-203ENST00000518872 RBM33Q96EV2 1170 aaKnown RBP44.25■■■■■ 4.67
SYNPO-203ENST00000518872 PTPRUQ92729 1446 aa44.24■■■■■ 4.67
SYNPO-203ENST00000518872 XRN1Q8IZH2 1706 aaKnown RBP44.24■■■■■ 4.67
SYNPO-203ENST00000518872 DISP3Q9P2K9 1392 aa44.23■■■■■ 4.67
SYNPO-203ENST00000518872 FOXD1Q16676 465 aa44.22■■■■■ 4.67
SYNPO-203ENST00000518872 PPLO60437 1756 aa44.22■■■■■ 4.67
SYNPO-203ENST00000518872 CCDC144AA2RUR9 1427 aa44.21■■■■■ 4.67
SYNPO-203ENST00000518872 AMOTL2Q9Y2J4 779 aa44.19■■■■■ 4.66
SYNPO-203ENST00000518872 VGFO15240 615 aaPredicted RBP44.18■■■■■ 4.66
SYNPO-203ENST00000518872 RAB3GAP2Q9H2M9 1393 aa44.17■■■■■ 4.66
SYNPO-203ENST00000518872 METP08581 1390 aa44.14■■■■■ 4.66
SYNPO-203ENST00000518872 ROBO1Q9Y6N7 1651 aa44.13■■■■■ 4.66
SYNPO-203ENST00000518872 SETD1AO15047 1707 aaKnown RBP44.13■■■■■ 4.66
SYNPO-203ENST00000518872 SPATA31E1Q6ZUB1 1445 aa44.12■■■■■ 4.65
SYNPO-203ENST00000518872 SIPA1L2Q9P2F8 1722 aaPredicted RBP44.1■■■■■ 4.65
SYNPO-203ENST00000518872 C19orf44Q9H6X5 657 aa44.06■■■■■ 4.64
SYNPO-203ENST00000518872 IFT172Q9UG01 1749 aa44.05■■■■■ 4.64
SYNPO-203ENST00000518872 SLAIN2Q9P270 581 aa44.05■■■■■ 4.64
SYNPO-203ENST00000518872 MED1Q15648 1581 aaPredicted RBP44.05■■■■■ 4.64
SYNPO-203ENST00000518872 HRCP23327 699 aa44.02■■■■■ 4.64
SYNPO-203ENST00000518872 DCCP43146 1447 aa44.01■■■■■ 4.64
SYNPO-203ENST00000518872 PRAG1Q86YV5 1406 aa44■■■■■ 4.63
SYNPO-203ENST00000518872 C14orf37Q86TY3 774 aa44■■■■■ 4.63
SYNPO-203ENST00000518872 CADPS2Q86UW7 1296 aa44■■■■■ 4.63
SYNPO-203ENST00000518872 ANKRD30BQ9BXX2 1392 aa43.98■■■■■ 4.63
SYNPO-203ENST00000518872 PTCH1Q13635 1447 aa43.94■■■■■ 4.62
SYNPO-203ENST00000518872 ATF3P18847 181 aa43.93■■■■■ 4.62
SYNPO-203ENST00000518872 RGL3Q3MIN7 710 aa43.9■■■■■ 4.62
SYNPO-203ENST00000518872 ADGRL3Q9HAR2 1447 aa43.89■■■■■ 4.62
SYNPO-203ENST00000518872 ADGRF5Q8IZF2 1346 aa43.87■■■■■ 4.61
SYNPO-203ENST00000518872 ILDR2Q71H61 639 aa43.86■■■■■ 4.61
SYNPO-203ENST00000518872 PHLPP1O60346 1717 aa43.85■■■■■ 4.61
SYNPO-203ENST00000518872 NALCNQ8IZF0 1738 aa43.85■■■■■ 4.61
SYNPO-203ENST00000518872 PIK3C2GO75747 1445 aa43.82■■■■■ 4.61
SYNPO-203ENST00000518872 AHDC1Q5TGY3 1603 aaPredicted RBP43.8■■■■■ 4.6
SYNPO-203ENST00000518872 ROBO2Q9HCK4 1378 aa43.8■■■■■ 4.6
SYNPO-203ENST00000518872 MST1RQ04912 1400 aa43.78■■■■■ 4.6
SYNPO-203ENST00000518872 COL16A1Q07092 1604 aaPredicted RBP43.77■■■■■ 4.6
SYNPO-203ENST00000518872 MYOM2P54296 1465 aa43.76■■■■■ 4.6
SYNPO-203ENST00000518872 NRXN1Q9ULB1 1477 aa43.76■■■■■ 4.6
SYNPO-203ENST00000518872 TECPR2O15040 1411 aa43.73■■■■■ 4.59
SYNPO-203ENST00000518872 ASXL1Q8IXJ9 1541 aa43.71■■■■■ 4.59
SYNPO-203ENST00000518872 BRINP3Q76B58 766 aa43.7■■■■■ 4.59
SYNPO-203ENST00000518872 KNDC1Q76NI1 1749 aa43.7■■■■■ 4.59
SYNPO-203ENST00000518872 LAMC1P11047 1609 aa43.68■■■■■ 4.58
SYNPO-203ENST00000518872 JCADQ9P266 1359 aa43.67■■■■■ 4.58
SYNPO-203ENST00000518872 LRPPRCP42704 1394 aaKnown RBP43.67■■■■■ 4.58
SYNPO-203ENST00000518872 ABCC11Q96J66 1382 aa43.64■■■■■ 4.58
SYNPO-203ENST00000518872 NHSL1Q5SYE7 1610 aa43.63■■■■■ 4.58
SYNPO-203ENST00000518872 PHF23Q9BUL5 403 aaPredicted RBP43.62■■■■■ 4.57
SYNPO-203ENST00000518872 C14orf93Q9H972 538 aaKnown RBP43.61■■■■■ 4.57
SYNPO-203ENST00000518872 C1orf167Q5SNV9 1468 aa43.57■■■■■ 4.57
SYNPO-203ENST00000518872 SHPRHQ149N8 1683 aa43.57■■■■■ 4.57
SYNPO-203ENST00000518872 CDC42BPGQ6DT37 1551 aa43.57■■■■■ 4.57
SYNPO-203ENST00000518872 YTHDC2Q9H6S0 1430 aaKnown RBP43.56■■■■■ 4.56
SYNPO-203ENST00000518872 SOCS7O14512 581 aa43.54■■■■■ 4.56
SYNPO-203ENST00000518872 TMEM132EQ6IEE7 984 aa43.53■■■■■ 4.56
SYNPO-203ENST00000518872 STAC3Q96MF2 364 aa43.52■■■■■ 4.56
SYNPO-203ENST00000518872 SIRT1Q96EB6 747 aa43.5■■■■■ 4.55
SYNPO-203ENST00000518872 STK26Q9P289 416 aa43.49■■■■■ 4.55
SYNPO-203ENST00000518872 SPATA31A6Q5VVP1 1343 aa43.48■■■■■ 4.55
SYNPO-203ENST00000518872 CFAP70Q5T0N1 1121 aa43.47■■■■■ 4.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms