RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 TARBP1Q13395 1621 aaKnown RBP9.35□□□□□ -0.91
PTCD3-219ENST00000494323 TRIM6-TRIM34B2RNG4 842 aa9.35□□□□□ -0.91
PTCD3-219ENST00000494323 CHD1O14646 1710 aa9.35□□□□□ -0.91
PTCD3-219ENST00000494323 ONECUT3O60422 494 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-219ENST00000494323 CHMP7Q8WUX9 453 aaPredicted RBP9.35□□□□□ -0.91
PTCD3-219ENST00000494323 WNT2BQ93097 391 aa9.35□□□□□ -0.91
PTCD3-219ENST00000494323 KIAA1468Q9P260 1216 aa9.35□□□□□ -0.91
PTCD3-219ENST00000494323 POLA1P09884 1462 aaPredicted RBP9.34□□□□□ -0.91
PTCD3-219ENST00000494323 BARGINQ6ZT62 677 aa9.34□□□□□ -0.91
PTCD3-219ENST00000494323 CERKQ8TCT0 537 aa9.34□□□□□ -0.91
PTCD3-219ENST00000494323 NUTM2FA1L443 756 aa9.33□□□□□ -0.92
PTCD3-219ENST00000494323 PRIM1P49642 420 aaKnown RBP9.33□□□□□ -0.92
PTCD3-219ENST00000494323 PTPN5P54829 565 aa9.33□□□□□ -0.92
PTCD3-219ENST00000494323 ARAP1Q96P48 1450 aa9.33□□□□□ -0.92
PTCD3-219ENST00000494323 THSD4Q6ZMP0 1018 aa9.32□□□□□ -0.92
PTCD3-219ENST00000494323 LAPTM4BQ86VI4 370 aa9.32□□□□□ -0.92
PTCD3-219ENST00000494323 ANKK1Q8NFD2 765 aa9.31□□□□□ -0.92
PTCD3-219ENST00000494323 CDHR5Q9HBB8 845 aa9.31□□□□□ -0.92
PTCD3-219ENST00000494323 SEPT9Q9UHD8 586 aaPredicted RBP9.31□□□□□ -0.92
PTCD3-219ENST00000494323 GPR37O15354 613 aa9.3□□□□□ -0.92
PTCD3-219ENST00000494323 PACS2Q86VP3 889 aa9.3□□□□□ -0.92
PTCD3-219ENST00000494323 CDCA7LQ96GN5 454 aa9.3□□□□□ -0.92
PTCD3-219ENST00000494323 TSKSQ9UJT2 592 aa9.3□□□□□ -0.92
PTCD3-219ENST00000494323 FCHSD2O94868 740 aa9.29□□□□□ -0.92
PTCD3-219ENST00000494323 PRSS12P56730 875 aa9.29□□□□□ -0.92
PTCD3-219ENST00000494323 SLC24A3Q9HC58 644 aa9.29□□□□□ -0.92
PTCD3-219ENST00000494323 FGD5Q6ZNL6 1462 aa9.28□□□□□ -0.92
PTCD3-219ENST00000494323 FAM98CQ17RN3 349 aaKnown RBP9.28□□□□□ -0.92
PTCD3-219ENST00000494323 KRI1Q8N9T8 703 aaKnown RBP9.28□□□□□ -0.92
PTCD3-219ENST00000494323 ZFRQ96KR1 1074 aaKnown RBP9.28□□□□□ -0.92
PTCD3-219ENST00000494323 SNAPC4Q5SXM2 1469 aa9.28□□□□□ -0.92
PTCD3-219ENST00000494323 HIC1Q14526 733 aa9.27□□□□□ -0.93
PTCD3-219ENST00000494323 PLA2G2EQ9NZK7 142 aa9.27□□□□□ -0.93
PTCD3-219ENST00000494323 SUPT5HO00267 1087 aaKnown RBP9.26□□□□□ -0.93
PTCD3-219ENST00000494323 AK7Q96M32 723 aa9.26□□□□□ -0.93
PTCD3-219ENST00000494323 CUX1P39880 1505 aa9.26□□□□□ -0.93
PTCD3-219ENST00000494323 GNPATO15228 680 aa9.25□□□□□ -0.93
PTCD3-219ENST00000494323 PTGDRQ13258 359 aa9.25□□□□□ -0.93
PTCD3-219ENST00000494323 RBM27Q9P2N5 1060 aaKnown RBP9.25□□□□□ -0.93
PTCD3-219ENST00000494323 SOWAHBA6NEL2 793 aa9.24□□□□□ -0.93
PTCD3-219ENST00000494323 NBPF26B4DH59 902 aa9.24□□□□□ -0.93
PTCD3-219ENST00000494323 BCAMP50895 628 aa9.24□□□□□ -0.93
PTCD3-219ENST00000494323 GRIN2BQ13224 1484 aa9.23□□□□□ -0.93
PTCD3-219ENST00000494323 FAM198AQ9UFP1 575 aa9.23□□□□□ -0.93
PTCD3-219ENST00000494323 PNMA3Q9UL41 463 aa9.23□□□□□ -0.93
PTCD3-219ENST00000494323 MINK1Q8N4C8 1332 aaPredicted RBP9.23□□□□□ -0.93
PTCD3-219ENST00000494323 MAP2K5Q13163 448 aa9.22□□□□□ -0.93
PTCD3-219ENST00000494323 LRCH3Q96II8 777 aa9.22□□□□□ -0.93
PTCD3-219ENST00000494323 SYNJ2O15056 1496 aa9.21□□□□□ -0.93
PTCD3-219ENST00000494323 MAGI1Q96QZ7 1491 aaPredicted RBP9.21□□□□□ -0.93
PTCD3-219ENST00000494323 CLASP1Q7Z460 1538 aa9.21□□□□□ -0.93
PTCD3-219ENST00000494323 SMAPO00193 183 aa9.21□□□□□ -0.94
PTCD3-219ENST00000494323 TATDN2Q93075 761 aa9.21□□□□□ -0.94
PTCD3-219ENST00000494323 NPDC1Q9NQX5 325 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-219ENST00000494323 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.21□□□□□ -0.94
PTCD3-219ENST00000494323 GAPVD1Q14C86 1478 aa9.21□□□□□ -0.94
PTCD3-219ENST00000494323 SYNJ1O43426 1573 aa9.2□□□□□ -0.94
PTCD3-219ENST00000494323 PADI6Q6TGC4 694 aa9.2□□□□□ -0.94
PTCD3-219ENST00000494323 BRPF1P55201 1214 aaPredicted RBP9.19□□□□□ -0.94
PTCD3-219ENST00000494323 NUDT18Q6ZVK8 323 aa9.19□□□□□ -0.94
PTCD3-219ENST00000494323 IRF6O14896 467 aa9.18□□□□□ -0.94
PTCD3-219ENST00000494323 TMEM132AQ24JP5 1023 aa9.18□□□□□ -0.94
PTCD3-219ENST00000494323 C3orf80F5H4A9 247 aa9.17□□□□□ -0.94
PTCD3-219ENST00000494323 NEUROD2Q15784 382 aa9.17□□□□□ -0.94
PTCD3-219ENST00000494323 NYAP1Q6ZVC0 841 aa9.17□□□□□ -0.94
PTCD3-219ENST00000494323 HPS5Q9UPZ3 1129 aa9.17□□□□□ -0.94
PTCD3-219ENST00000494323 WDR97A6NE52 1622 aa9.16□□□□□ -0.94
PTCD3-219ENST00000494323 TRIM66O15016 1216 aa9.16□□□□□ -0.94
PTCD3-219ENST00000494323 FECHP22830 423 aa9.16□□□□□ -0.94
PTCD3-219ENST00000494323 HDGFP51858 240 aaKnown RBP9.16□□□□□ -0.94
PTCD3-219ENST00000494323 SAMD7Q7Z3H4 446 aa9.16□□□□□ -0.94
PTCD3-219ENST00000494323 TTC13Q8NBP0 860 aa9.16□□□□□ -0.94
PTCD3-219ENST00000494323 CCDC102AQ96A19 550 aa9.16□□□□□ -0.94
PTCD3-219ENST00000494323 WBP1LQ9NX94 342 aa9.16□□□□□ -0.94
PTCD3-219ENST00000494323 TSR3Q9UJK0 312 aaKnown RBP9.16□□□□□ -0.94
PTCD3-219ENST00000494323 PBRM1Q86U86 1689 aa9.15□□□□□ -0.94
PTCD3-219ENST00000494323 ABCA10Q8WWZ4 1543 aa9.15□□□□□ -0.95
PTCD3-219ENST00000494323 ERCC6L2Q5T890 1561 aa9.13□□□□□ -0.95
PTCD3-219ENST00000494323 RNF40O75150 1001 aa9.13□□□□□ -0.95
PTCD3-219ENST00000494323 PPP4CP60510 307 aa9.13□□□□□ -0.95
PTCD3-219ENST00000494323 TIMELESSQ9UNS1 1208 aa9.13□□□□□ -0.95
PTCD3-219ENST00000494323 GTF3C3Q9Y5Q9 886 aa9.13□□□□□ -0.95
PTCD3-219ENST00000494323 WRNQ14191 1432 aaPredicted RBP eCLIP9.13□□□□□ -0.95
PTCD3-219ENST00000494323 PDE4DQ08499 809 aa9.12□□□□□ -0.95
PTCD3-219ENST00000494323 GRIN2AQ12879 1464 aa9.11□□□□□ -0.95
PTCD3-219ENST00000494323 AMHR2Q16671 573 aa9.11□□□□□ -0.95
PTCD3-219ENST00000494323 IFFO2Q5TF58 517 aa9.11□□□□□ -0.95
PTCD3-219ENST00000494323 ABCA5Q8WWZ7 1642 aa9.11□□□□□ -0.95
PTCD3-219ENST00000494323 EYA1Q99502 592 aa9.09□□□□□ -0.95
PTCD3-219ENST00000494323 DAXXQ9UER7 740 aaPredicted RBP9.09□□□□□ -0.95
PTCD3-219ENST00000494323 CEP170Q5SW79 1584 aa9.08□□□□□ -0.96
PTCD3-219ENST00000494323 ITGBL1O95965 494 aaPredicted RBP9.08□□□□□ -0.96
PTCD3-219ENST00000494323 OATP04181 439 aa9.08□□□□□ -0.96
PTCD3-219ENST00000494323 SLC4A3P48751 1232 aa9.08□□□□□ -0.96
PTCD3-219ENST00000494323 SWT1Q5T5J6 900 aaKnown RBP9.08□□□□□ -0.96
PTCD3-219ENST00000494323 RBM46Q8TBY0 533 aaKnown RBP9.08□□□□□ -0.96
PTCD3-219ENST00000494323 NECTIN2Q92692 538 aa9.08□□□□□ -0.96
PTCD3-219ENST00000494323 FHAD1B1AJZ9 1412 aa9.07□□□□□ -0.96
PTCD3-219ENST00000494323 NUP160Q12769 1436 aa9.07□□□□□ -0.96
PTCD3-219ENST00000494323 SLF2Q8IX21 1173 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms