RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 AEBP2Q6ZN18 517 aaPredicted RBP22.42■■□□□ 1.18
PTCD3-219ENST00000494323 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
PTCD3-219ENST00000494323 SENP3Q9H4L4 574 aaPredicted RBP19.14■□□□□ 0.65
PTCD3-219ENST00000494323 PHF23Q9BUL5 403 aaPredicted RBP18.93■□□□□ 0.62
PTCD3-219ENST00000494323 FOXD1Q16676 465 aa17.77■□□□□ 0.44
PTCD3-219ENST00000494323 PLPPR3Q6T4P5 718 aa17.43■□□□□ 0.38
PTCD3-219ENST00000494323 POTEDQ86YR6 584 aa16.89■□□□□ 0.29
PTCD3-219ENST00000494323 PPP6R1Q9UPN7 881 aa16.81■□□□□ 0.28
PTCD3-219ENST00000494323 ADRA2BP18089 450 aa16.8■□□□□ 0.28
PTCD3-219ENST00000494323 PIAS4Q8N2W9 510 aaPredicted RBP16.72■□□□□ 0.27
PTCD3-219ENST00000494323 MSH5O43196 834 aa16.57■□□□□ 0.24
PTCD3-219ENST00000494323 SCAF1Q9H7N4 1312 aaKnown RBP15.43■□□□□ 0.06
PTCD3-219ENST00000494323 MAPK8IP2Q13387 824 aaPredicted RBP15.33■□□□□ 0.04
PTCD3-219ENST00000494323 PPP4R3CPQ6ZMV5 832 aa15.29■□□□□ 0.04
PTCD3-219ENST00000494323 DMRT2Q9Y5R5 561 aa15.2■□□□□ 0.02
PTCD3-219ENST00000494323 CNKSR2Q8WXI2 1034 aa14.95□□□□□ -0.02
PTCD3-219ENST00000494323 NCBP3Q53F19 620 aaKnown RBP14.83□□□□□ -0.04
PTCD3-219ENST00000494323 HOXD11P31277 338 aaPredicted RBP14.75□□□□□ -0.05
PTCD3-219ENST00000494323 RNF216Q9NWF9 866 aaPredicted RBP14.74□□□□□ -0.05
PTCD3-219ENST00000494323 DCAF8L1A6NGE4 600 aa14.62□□□□□ -0.07
PTCD3-219ENST00000494323 NPM3O75607 178 aaKnown RBP14.58□□□□□ -0.08
PTCD3-219ENST00000494323 KCNA4P22459 653 aa14.55□□□□□ -0.08
PTCD3-219ENST00000494323 CACNB1Q02641 598 aaPredicted RBP14.37□□□□□ -0.11
PTCD3-219ENST00000494323 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
PTCD3-219ENST00000494323 RNF39Q9H2S5 420 aa14.13□□□□□ -0.15
PTCD3-219ENST00000494323 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.1□□□□□ -0.157e-11■■□□□ 11.9
PTCD3-219ENST00000494323 C1QBPQ07021 282 aaKnown RBP13.96□□□□□ -0.17
PTCD3-219ENST00000494323 SLC4A2P04920 1241 aa13.82□□□□□ -0.2
PTCD3-219ENST00000494323 SLC4A1APQ9BWU0 796 aaKnown RBP13.82□□□□□ -0.2
PTCD3-219ENST00000494323 U3KPZ7 1027 aaPredicted RBP13.8□□□□□ -0.2
PTCD3-219ENST00000494323 EHMT2Q96KQ7 1210 aa13.63□□□□□ -0.23
PTCD3-219ENST00000494323 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.56□□□□□ -0.24
PTCD3-219ENST00000494323 HNRNPUL2Q1KMD3 747 aaKnown RBP13.56□□□□□ -0.24
PTCD3-219ENST00000494323 CAPN15O75808 1086 aa13.52□□□□□ -0.25
PTCD3-219ENST00000494323 APLP2Q06481 763 aa13.52□□□□□ -0.25
PTCD3-219ENST00000494323 FOXD4L1Q9NU39 408 aa13.52□□□□□ -0.25
PTCD3-219ENST00000494323 MYCNP04198 464 aaPredicted RBP13.51□□□□□ -0.25
PTCD3-219ENST00000494323 SPINK5Q9NQ38 1064 aaPredicted RBP13.51□□□□□ -0.25
PTCD3-219ENST00000494323 SAMD1Q6SPF0 538 aaPredicted RBP13.49□□□□□ -0.25
PTCD3-219ENST00000494323 TRHP20396 242 aaPredicted RBP13.37□□□□□ -0.27
PTCD3-219ENST00000494323 ZNF219Q9P2Y4 722 aaPredicted RBP13.37□□□□□ -0.27
PTCD3-219ENST00000494323 ZBTB22O15209 634 aa13.36□□□□□ -0.27
PTCD3-219ENST00000494323 CSRNP3Q8WYN3 585 aa13.36□□□□□ -0.27
PTCD3-219ENST00000494323 DSG3P32926 999 aa13.33□□□□□ -0.28
PTCD3-219ENST00000494323 ABCB7O75027 752 aa13.21□□□□□ -0.29
PTCD3-219ENST00000494323 POTEHQ6S545 545 aa13.13□□□□□ -0.31
PTCD3-219ENST00000494323 ATF5Q9Y2D1 282 aaPredicted RBP13.12□□□□□ -0.31
PTCD3-219ENST00000494323 ATXN8OSP0DMR3 200 aa13.06□□□□□ -0.32
PTCD3-219ENST00000494323 POLA2Q14181 598 aa13.05□□□□□ -0.32
PTCD3-219ENST00000494323 ZBTB12Q9Y330 459 aaPredicted RBP12.85□□□□□ -0.35
PTCD3-219ENST00000494323 RBM42Q9BTD8 480 aaKnown RBP12.76□□□□□ -0.37
PTCD3-219ENST00000494323 NISCHQ9Y2I1 1504 aa12.76□□□□□ -0.37
PTCD3-219ENST00000494323 FBLN2P98095 1184 aa12.66□□□□□ -0.38
PTCD3-219ENST00000494323 OSCARQ8IYS5 282 aa12.63□□□□□ -0.39
PTCD3-219ENST00000494323 MKRN4PQ13434 485 aaPredicted RBP12.53□□□□□ -0.4
PTCD3-219ENST00000494323 AKT1S1Q96B36 256 aa12.51□□□□□ -0.41
PTCD3-219ENST00000494323 SPDYE2BA6NHP3 402 aa12.45□□□□□ -0.42
PTCD3-219ENST00000494323 SPDYE6P0CI01 402 aa12.45□□□□□ -0.42
PTCD3-219ENST00000494323 SPDYE2Q495Y8 402 aa12.45□□□□□ -0.42
PTCD3-219ENST00000494323 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
PTCD3-219ENST00000494323 ZNF692Q9BU19 519 aaPredicted RBP12.36□□□□□ -0.43
PTCD3-219ENST00000494323 CHRDL2Q6WN34 429 aa12.34□□□□□ -0.43
PTCD3-219ENST00000494323 SSUH2Q9Y2M2 353 aa12.3□□□□□ -0.44
PTCD3-219ENST00000494323 PITPNM1O00562 1244 aa12.24□□□□□ -0.45
PTCD3-219ENST00000494323 SPDYE1Q8NFV5 336 aaPredicted RBP12.18□□□□□ -0.46
PTCD3-219ENST00000494323 PABPN1Q86U42 306 aaKnown RBP eCLIP12.17□□□□□ -0.46
PTCD3-219ENST00000494323 CLEC11AQ9Y240 323 aa12.15□□□□□ -0.46
PTCD3-219ENST00000494323 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
PTCD3-219ENST00000494323 SP7Q8TDD2 431 aaPredicted RBP12.1□□□□□ -0.47
PTCD3-219ENST00000494323 PIP4P2Q8N4L2 257 aa12.09□□□□□ -0.47
PTCD3-219ENST00000494323 FKBP8Q14318 412 aa12.07□□□□□ -0.48
PTCD3-219ENST00000494323 FXR2P51116 673 aaKnown RBP eCLIP12.06□□□□□ -0.48
PTCD3-219ENST00000494323 PRR29P0C7W0 189 aa11.98□□□□□ -0.49
PTCD3-219ENST00000494323 PRKAR2AP13861 404 aaKnown RBP11.94□□□□□ -0.5
PTCD3-219ENST00000494323 STAG3Q9UJ98 1225 aa11.93□□□□□ -0.5
PTCD3-219ENST00000494323 CHADLQ6NUI6 762 aa11.86□□□□□ -0.51
PTCD3-219ENST00000494323 PROM2Q8N271 834 aa11.84□□□□□ -0.51
PTCD3-219ENST00000494323 HAX1O00165 279 aa11.82□□□□□ -0.52
PTCD3-219ENST00000494323 CREBZFQ9NS37 354 aa11.72□□□□□ -0.53
PTCD3-219ENST00000494323 FARP1Q9Y4F1 1045 aaPredicted RBP11.71□□□□□ -0.53
PTCD3-219ENST00000494323 ABCC9O60706 1549 aa11.67□□□□□ -0.54
PTCD3-219ENST00000494323 C19orf67A6NJJ6 358 aa11.67□□□□□ -0.54
PTCD3-219ENST00000494323 EVX2Q03828 476 aa11.67□□□□□ -0.54
PTCD3-219ENST00000494323 FBXO3Q9UK99 471 aa11.64□□□□□ -0.55
PTCD3-219ENST00000494323 CD44P16070 742 aaKnown RBP11.59□□□□□ -0.55
PTCD3-219ENST00000494323 PLEKHG5O94827 1062 aa11.57□□□□□ -0.56
PTCD3-219ENST00000494323 NPM1P06748 294 aaKnown RBP eCLIP11.56□□□□□ -0.56
PTCD3-219ENST00000494323 MIER1Q8N108 512 aa11.55□□□□□ -0.56
PTCD3-219ENST00000494323 MNX1P50219 401 aaPredicted RBP11.54□□□□□ -0.56
PTCD3-219ENST00000494323 AMER1Q5JTC6 1135 aaPredicted RBP11.51□□□□□ -0.57
PTCD3-219ENST00000494323 PLCD3Q8N3E9 789 aa11.51□□□□□ -0.57
PTCD3-219ENST00000494323 PAK3O75914 559 aaPredicted RBP11.48□□□□□ -0.57
PTCD3-219ENST00000494323 ZRANB1Q9UGI0 708 aa11.47□□□□□ -0.57
PTCD3-219ENST00000494323 RTN4Q9NQC3 1192 aaKnown RBP11.45□□□□□ -0.58
PTCD3-219ENST00000494323 VASPP50552 380 aaPredicted RBP11.43□□□□□ -0.58
PTCD3-219ENST00000494323 ZBTB47Q9UFB7 747 aaPredicted RBP11.43□□□□□ -0.58
PTCD3-219ENST00000494323 GABBR2O75899 941 aa11.42□□□□□ -0.58
PTCD3-219ENST00000494323 ZNF579Q8NAF0 562 aaKnown RBP11.41□□□□□ -0.58
PTCD3-219ENST00000494323 CCDC180Q9P1Z9 1646 aa11.41□□□□□ -0.58
PTCD3-219ENST00000494323 CLCN6P51797 869 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 90.8 ms