RNA–Protein interactions for RNA: ENST00000480900.1

HSPG2-209, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 500 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-209ENST00000480900 TRIM52Q96A61 297 aa25.55■■□□□ 1.68
HSPG2-209ENST00000480900 PLEKHG1Q9ULL1 1385 aa25.55■■□□□ 1.68
HSPG2-209ENST00000480900 CLTCL1P53675 1640 aa25.53■■□□□ 1.68
HSPG2-209ENST00000480900 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.53■■□□□ 1.68
HSPG2-209ENST00000480900 KIF1BO60333 1816 aa25.53■■□□□ 1.68
HSPG2-209ENST00000480900 XIRP1Q702N8 1843 aaKnown RBP25.52■■□□□ 1.68
HSPG2-209ENST00000480900 PPP1R15AO75807 674 aaPredicted RBP25.52■■□□□ 1.68
HSPG2-209ENST00000480900 SLC26A8Q96RN1 970 aa25.5■■□□□ 1.67
HSPG2-209ENST00000480900 NWD1Q149M9 1564 aa25.49■■□□□ 1.67
HSPG2-209ENST00000480900 SLC4A1APQ9BWU0 796 aaKnown RBP25.48■■□□□ 1.67
HSPG2-209ENST00000480900 CHD2O14647 1828 aaKnown RBP25.48■■□□□ 1.67
HSPG2-209ENST00000480900 TOM1O60784 492 aa25.47■■□□□ 1.67
HSPG2-209ENST00000480900 BCANQ96GW7 911 aa25.47■■□□□ 1.67
HSPG2-209ENST00000480900 KCNA6P17658 529 aa25.46■■□□□ 1.67
HSPG2-209ENST00000480900 DIP2AQ14689 1571 aa25.46■■□□□ 1.67
HSPG2-209ENST00000480900 NKTRP30414 1462 aaKnown RBP25.45■■□□□ 1.66
HSPG2-209ENST00000480900 ALKQ9UM73 1620 aa25.45■■□□□ 1.66
HSPG2-209ENST00000480900 ACIN1Q9UKV3 1341 aaKnown RBP25.42■■□□□ 1.66
HSPG2-209ENST00000480900 ADAMTS13Q76LX8 1427 aa25.42■■□□□ 1.66
HSPG2-209ENST00000480900 SETD5Q9C0A6 1442 aa25.41■■□□□ 1.66
HSPG2-209ENST00000480900 NUTM2DQ5VT03 806 aaPredicted RBP25.41■■□□□ 1.66
HSPG2-209ENST00000480900 TBX22Q9Y458 520 aa25.41■■□□□ 1.66
HSPG2-209ENST00000480900 NEXMIFQ5QGS0 1516 aa25.39■■□□□ 1.66
HSPG2-209ENST00000480900 SENP3Q9H4L4 574 aaPredicted RBP25.39■■□□□ 1.66
HSPG2-209ENST00000480900 NRXN3Q9Y4C0 1643 aa25.38■■□□□ 1.65
HSPG2-209ENST00000480900 ZNF326Q5BKZ1 582 aaKnown RBP25.38■■□□□ 1.65
HSPG2-209ENST00000480900 SETBP1Q9Y6X0 1596 aa25.38■■□□□ 1.65
HSPG2-209ENST00000480900 TMEM94Q12767 1356 aa25.36■■□□□ 1.65
HSPG2-209ENST00000480900 PIK3R4Q99570 1358 aa25.36■■□□□ 1.65
HSPG2-209ENST00000480900 PIP4K2BP78356 416 aa25.36■■□□□ 1.65
HSPG2-209ENST00000480900 SCAF1Q9H7N4 1312 aaKnown RBP25.36■■□□□ 1.65
HSPG2-209ENST00000480900 MPHOSPH9Q99550 1183 aa25.35■■□□□ 1.65
HSPG2-209ENST00000480900 PROSER2Q86WR7 435 aaPredicted RBP25.34■■□□□ 1.65
HSPG2-209ENST00000480900 PPLO60437 1756 aa25.32■■□□□ 1.64
HSPG2-209ENST00000480900 RAB3GAP2Q9H2M9 1393 aa25.31■■□□□ 1.64
HSPG2-209ENST00000480900 FOXD1Q16676 465 aa25.31■■□□□ 1.64
HSPG2-209ENST00000480900 CCDC144AA2RUR9 1427 aa25.29■■□□□ 1.64
HSPG2-209ENST00000480900 XRN1Q8IZH2 1706 aaKnown RBP25.27■■□□□ 1.64
HSPG2-209ENST00000480900 RPGRIP1LQ68CZ1 1315 aa25.27■■□□□ 1.64
HSPG2-209ENST00000480900 HSPA1LP34931 641 aa25.26■■□□□ 1.63
HSPG2-209ENST00000480900 NCOA3Q9Y6Q9 1424 aa25.26■■□□□ 1.63
HSPG2-209ENST00000480900 PTPRUQ92729 1446 aa25.24■■□□□ 1.63
HSPG2-209ENST00000480900 MSH6P52701 1360 aa25.24■■□□□ 1.63
HSPG2-209ENST00000480900 RBM33Q96EV2 1170 aaKnown RBP25.24■■□□□ 1.63
HSPG2-209ENST00000480900 SETD1AO15047 1707 aaKnown RBP25.23■■□□□ 1.63
HSPG2-209ENST00000480900 VGFO15240 615 aaPredicted RBP25.23■■□□□ 1.63
HSPG2-209ENST00000480900 IFT172Q9UG01 1749 aa25.22■■□□□ 1.63
HSPG2-209ENST00000480900 SPATA31E1Q6ZUB1 1445 aa25.21■■□□□ 1.63
HSPG2-209ENST00000480900 AMOTL2Q9Y2J4 779 aa25.21■■□□□ 1.63
HSPG2-209ENST00000480900 FAM135BQ49AJ0 1406 aa25.2■■□□□ 1.62
HSPG2-209ENST00000480900 METP08581 1390 aa25.19■■□□□ 1.62
HSPG2-209ENST00000480900 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.18■■□□□ 1.62
HSPG2-209ENST00000480900 ROBO1Q9Y6N7 1651 aa25.18■■□□□ 1.62
HSPG2-209ENST00000480900 HRCP23327 699 aa25.18■■□□□ 1.62
HSPG2-209ENST00000480900 C14orf37Q86TY3 774 aa25.14■■□□□ 1.62
HSPG2-209ENST00000480900 ANKRD30BQ9BXX2 1392 aa25.14■■□□□ 1.61
HSPG2-209ENST00000480900 DISP3Q9P2K9 1392 aa25.13■■□□□ 1.61
HSPG2-209ENST00000480900 RGL3Q3MIN7 710 aa25.11■■□□□ 1.61
HSPG2-209ENST00000480900 C19orf44Q9H6X5 657 aa25.11■■□□□ 1.61
HSPG2-209ENST00000480900 SLAIN2Q9P270 581 aa25.1■■□□□ 1.61
HSPG2-209ENST00000480900 DCCP43146 1447 aa25.1■■□□□ 1.61
HSPG2-209ENST00000480900 PRAG1Q86YV5 1406 aa25.09■■□□□ 1.61
HSPG2-209ENST00000480900 CADPS2Q86UW7 1296 aa25.08■■□□□ 1.61
HSPG2-209ENST00000480900 PTCH1Q13635 1447 aa25.08■■□□□ 1.61
HSPG2-209ENST00000480900 NALCNQ8IZF0 1738 aa25.07■■□□□ 1.6
HSPG2-209ENST00000480900 MED1Q15648 1581 aaPredicted RBP25.07■■□□□ 1.6
HSPG2-209ENST00000480900 ADGRF5Q8IZF2 1346 aa25.07■■□□□ 1.6
HSPG2-209ENST00000480900 ATF3P18847 181 aa25.06■■□□□ 1.6
HSPG2-209ENST00000480900 ADGRL3Q9HAR2 1447 aa25.04■■□□□ 1.6
HSPG2-209ENST00000480900 PIK3C2GO75747 1445 aa25.03■■□□□ 1.6
HSPG2-209ENST00000480900 PHLPP1O60346 1717 aa25.03■■□□□ 1.6
HSPG2-209ENST00000480900 MYOM2P54296 1465 aa25.02■■□□□ 1.6
HSPG2-209ENST00000480900 NRXN1Q9ULB1 1477 aa25.01■■□□□ 1.59
HSPG2-209ENST00000480900 ROBO2Q9HCK4 1378 aa25■■□□□ 1.59
HSPG2-209ENST00000480900 LAMC1P11047 1609 aa25■■□□□ 1.59
HSPG2-209ENST00000480900 KNDC1Q76NI1 1749 aa24.99■■□□□ 1.59
HSPG2-209ENST00000480900 ASXL1Q8IXJ9 1541 aa24.98■■□□□ 1.59
HSPG2-209ENST00000480900 AHDC1Q5TGY3 1603 aaPredicted RBP24.97■■□□□ 1.59
HSPG2-209ENST00000480900 TECPR2O15040 1411 aa24.96■■□□□ 1.59
HSPG2-209ENST00000480900 MST1RQ04912 1400 aa24.96■■□□□ 1.59
HSPG2-209ENST00000480900 COL16A1Q07092 1604 aaPredicted RBP24.96■■□□□ 1.59
HSPG2-209ENST00000480900 LRPPRCP42704 1394 aaKnown RBP24.94■■□□□ 1.58
HSPG2-209ENST00000480900 C14orf93Q9H972 538 aaKnown RBP24.91■■□□□ 1.58
HSPG2-209ENST00000480900 ABCC11Q96J66 1382 aa24.91■■□□□ 1.58
HSPG2-209ENST00000480900 NHSL1Q5SYE7 1610 aa24.9■■□□□ 1.58
HSPG2-209ENST00000480900 BRINP3Q76B58 766 aa24.9■■□□□ 1.58
HSPG2-209ENST00000480900 YTHDC2Q9H6S0 1430 aaKnown RBP24.89■■□□□ 1.58
HSPG2-209ENST00000480900 CDC42BPGQ6DT37 1551 aa24.88■■□□□ 1.57
HSPG2-209ENST00000480900 TMEM132EQ6IEE7 984 aa24.88■■□□□ 1.57
HSPG2-209ENST00000480900 ILDR2Q71H61 639 aa24.88■■□□□ 1.57
HSPG2-209ENST00000480900 STK26Q9P289 416 aa24.87■■□□□ 1.57
HSPG2-209ENST00000480900 JCADQ9P266 1359 aa24.87■■□□□ 1.57
HSPG2-209ENST00000480900 STAC3Q96MF2 364 aa24.86■■□□□ 1.57
HSPG2-209ENST00000480900 C1orf167Q5SNV9 1468 aa24.85■■□□□ 1.57
HSPG2-209ENST00000480900 SHPRHQ149N8 1683 aa24.85■■□□□ 1.57
HSPG2-209ENST00000480900 CFAP70Q5T0N1 1121 aa24.84■■□□□ 1.57
HSPG2-209ENST00000480900 DHX57Q6P158 1386 aaKnown RBP24.83■■□□□ 1.57
HSPG2-209ENST00000480900 DCAF11Q8TEB1 546 aa24.83■■□□□ 1.57
HSPG2-209ENST00000480900 PHF23Q9BUL5 403 aaPredicted RBP24.83■■□□□ 1.57
HSPG2-209ENST00000480900 ADGRB1O14514 1584 aa24.81■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms