RNA–Protein interactions for RNA: ENST00000478616.1

SREBF1-212, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 5

Gene SREBF1, Length 882 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-212ENST00000478616 NWD1Q149M9 1564 aa28.33■■■□□ 2.12
SREBF1-212ENST00000478616 SLC26A8Q96RN1 970 aa28.32■■■□□ 2.12
SREBF1-212ENST00000478616 PLEKHG1Q9ULL1 1385 aa28.32■■■□□ 2.12
SREBF1-212ENST00000478616 CHD2O14647 1828 aaKnown RBP28.3■■■□□ 2.12
SREBF1-212ENST00000478616 NRXN3Q9Y4C0 1643 aa28.3■■■□□ 2.12
SREBF1-212ENST00000478616 ADAMTS13Q76LX8 1427 aa28.3■■■□□ 2.12
SREBF1-212ENST00000478616 UBAP1LF5GYI3 381 aa28.28■■■□□ 2.12
SREBF1-212ENST00000478616 CHGAP10645 457 aaKnown RBP28.28■■■□□ 2.12
SREBF1-212ENST00000478616 TRIM52Q96A61 297 aa28.28■■■□□ 2.12
SREBF1-212ENST00000478616 SENP3Q9H4L4 574 aaPredicted RBP28.28■■■□□ 2.12
SREBF1-212ENST00000478616 KIF1BO60333 1816 aa28.27■■■□□ 2.12
SREBF1-212ENST00000478616 NUTM2DQ5VT03 806 aaPredicted RBP28.27■■■□□ 2.12
SREBF1-212ENST00000478616 NEXMIFQ5QGS0 1516 aa28.25■■■□□ 2.11
SREBF1-212ENST00000478616 FOXD1Q16676 465 aa28.22■■■□□ 2.11
SREBF1-212ENST00000478616 SLC4A1APQ9BWU0 796 aaKnown RBP28.22■■■□□ 2.11
SREBF1-212ENST00000478616 KCNA6P17658 529 aa28.21■■■□□ 2.11
SREBF1-212ENST00000478616 SETD5Q9C0A6 1442 aa28.2■■■□□ 2.11
SREBF1-212ENST00000478616 SETBP1Q9Y6X0 1596 aa28.19■■■□□ 2.1
SREBF1-212ENST00000478616 DIP2AQ14689 1571 aa28.18■■■□□ 2.1
SREBF1-212ENST00000478616 NKTRP30414 1462 aaKnown RBP28.17■■■□□ 2.1
SREBF1-212ENST00000478616 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.17■■■□□ 2.1
SREBF1-212ENST00000478616 TBX22Q9Y458 520 aa28.17■■■□□ 2.1
SREBF1-212ENST00000478616 TMEM94Q12767 1356 aa28.15■■■□□ 2.1
SREBF1-212ENST00000478616 PPP1R15AO75807 674 aaPredicted RBP28.15■■■□□ 2.1
SREBF1-212ENST00000478616 MPHOSPH9Q99550 1183 aa28.15■■■□□ 2.1
SREBF1-212ENST00000478616 PTPRUQ92729 1446 aa28.15■■■□□ 2.1
SREBF1-212ENST00000478616 RAB3GAP2Q9H2M9 1393 aa28.14■■■□□ 2.1
SREBF1-212ENST00000478616 RBM33Q96EV2 1170 aaKnown RBP28.14■■■□□ 2.1
SREBF1-212ENST00000478616 SETD1AO15047 1707 aaKnown RBP28.14■■■□□ 2.1
SREBF1-212ENST00000478616 PPLO60437 1756 aa28.14■■■□□ 2.09
SREBF1-212ENST00000478616 HDGFP51858 240 aaKnown RBP28.13■■■□□ 2.09
SREBF1-212ENST00000478616 XRN1Q8IZH2 1706 aaKnown RBP28.1■■■□□ 2.09
SREBF1-212ENST00000478616 TOM1O60784 492 aa28.1■■■□□ 2.09
SREBF1-212ENST00000478616 BCANQ96GW7 911 aa28.1■■■□□ 2.09
SREBF1-212ENST00000478616 PIP4K2BP78356 416 aa28.09■■■□□ 2.09
SREBF1-212ENST00000478616 IFT172Q9UG01 1749 aa28.08■■■□□ 2.09
SREBF1-212ENST00000478616 ZNF326Q5BKZ1 582 aaKnown RBP28.07■■■□□ 2.08
SREBF1-212ENST00000478616 SPATA31E1Q6ZUB1 1445 aa28.07■■■□□ 2.08
SREBF1-212ENST00000478616 PIK3R4Q99570 1358 aa28.06■■■□□ 2.08
SREBF1-212ENST00000478616 HSPA1LP34931 641 aa28.05■■■□□ 2.08
SREBF1-212ENST00000478616 PROSER2Q86WR7 435 aaPredicted RBP28.05■■■□□ 2.08
SREBF1-212ENST00000478616 METP08581 1390 aa28.04■■■□□ 2.08
SREBF1-212ENST00000478616 SCAF1Q9H7N4 1312 aaKnown RBP28■■■□□ 2.07
SREBF1-212ENST00000478616 CCDC144AA2RUR9 1427 aa27.99■■■□□ 2.07
SREBF1-212ENST00000478616 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.98■■■□□ 2.07
SREBF1-212ENST00000478616 AMOTL2Q9Y2J4 779 aa27.96■■■□□ 2.07
SREBF1-212ENST00000478616 ROBO1Q9Y6N7 1651 aa27.95■■■□□ 2.07
SREBF1-212ENST00000478616 RPGRIP1LQ68CZ1 1315 aa27.94■■■□□ 2.06
SREBF1-212ENST00000478616 NCOA3Q9Y6Q9 1424 aa27.93■■■□□ 2.06
SREBF1-212ENST00000478616 FAM135BQ49AJ0 1406 aa27.92■■■□□ 2.06
SREBF1-212ENST00000478616 ADGRF5Q8IZF2 1346 aa27.91■■■□□ 2.06
SREBF1-212ENST00000478616 ACIN1Q9UKV3 1341 aaKnown RBP27.91■■■□□ 2.06
SREBF1-212ENST00000478616 ANKRD30BQ9BXX2 1392 aa27.9■■■□□ 2.06
SREBF1-212ENST00000478616 HRCP23327 699 aa27.9■■■□□ 2.06
SREBF1-212ENST00000478616 MSH6P52701 1360 aa27.89■■■□□ 2.06
SREBF1-212ENST00000478616 ASXL1Q8IXJ9 1541 aa27.89■■■□□ 2.06
SREBF1-212ENST00000478616 VGFO15240 615 aaPredicted RBP27.88■■■□□ 2.05
SREBF1-212ENST00000478616 NALCNQ8IZF0 1738 aa27.88■■■□□ 2.05
SREBF1-212ENST00000478616 RGL3Q3MIN7 710 aa27.87■■■□□ 2.05
SREBF1-212ENST00000478616 PRAG1Q86YV5 1406 aa27.86■■■□□ 2.05
SREBF1-212ENST00000478616 PIK3C2GO75747 1445 aa27.83■■■□□ 2.05
SREBF1-212ENST00000478616 NRXN1Q9ULB1 1477 aa27.83■■■□□ 2.04
SREBF1-212ENST00000478616 MED1Q15648 1581 aaPredicted RBP27.82■■■□□ 2.04
SREBF1-212ENST00000478616 ROBO2Q9HCK4 1378 aa27.82■■■□□ 2.04
SREBF1-212ENST00000478616 C19orf44Q9H6X5 657 aa27.8■■■□□ 2.04
SREBF1-212ENST00000478616 SLAIN2Q9P270 581 aa27.8■■■□□ 2.04
SREBF1-212ENST00000478616 PTCH1Q13635 1447 aa27.8■■■□□ 2.04
SREBF1-212ENST00000478616 DISP3Q9P2K9 1392 aa27.79■■■□□ 2.04
SREBF1-212ENST00000478616 ADGRL3Q9HAR2 1447 aa27.77■■■□□ 2.04
SREBF1-212ENST00000478616 MYOM2P54296 1465 aa27.76■■■□□ 2.04
SREBF1-212ENST00000478616 DCCP43146 1447 aa27.75■■■□□ 2.03
SREBF1-212ENST00000478616 COL16A1Q07092 1604 aaPredicted RBP27.75■■■□□ 2.03
SREBF1-212ENST00000478616 PHLPP1O60346 1717 aa27.75■■■□□ 2.03
SREBF1-212ENST00000478616 KNDC1Q76NI1 1749 aa27.75■■■□□ 2.03
SREBF1-212ENST00000478616 MST1RQ04912 1400 aa27.75■■■□□ 2.03
SREBF1-212ENST00000478616 ILDR2Q71H61 639 aa27.74■■■□□ 2.03
SREBF1-212ENST00000478616 C14orf37Q86TY3 774 aa27.72■■■□□ 2.03
SREBF1-212ENST00000478616 TECPR2O15040 1411 aa27.71■■■□□ 2.03
SREBF1-212ENST00000478616 CADPS2Q86UW7 1296 aa27.71■■■□□ 2.03
SREBF1-212ENST00000478616 AHDC1Q5TGY3 1603 aaPredicted RBP27.7■■■□□ 2.03
SREBF1-212ENST00000478616 TMEM132EQ6IEE7 984 aa27.68■■■□□ 2.02
SREBF1-212ENST00000478616 DHX57Q6P158 1386 aaKnown RBP27.68■■■□□ 2.02
SREBF1-212ENST00000478616 ATF3P18847 181 aa27.67■■■□□ 2.02
SREBF1-212ENST00000478616 LRPPRCP42704 1394 aaKnown RBP27.67■■■□□ 2.02
SREBF1-212ENST00000478616 NHSL1Q5SYE7 1610 aa27.67■■■□□ 2.02
SREBF1-212ENST00000478616 C14orf93Q9H972 538 aaKnown RBP27.66■■■□□ 2.02
SREBF1-212ENST00000478616 LAMC1P11047 1609 aa27.66■■■□□ 2.02
SREBF1-212ENST00000478616 BRINP3Q76B58 766 aa27.65■■■□□ 2.02
SREBF1-212ENST00000478616 PLEKHH1Q9ULM0 1364 aa27.64■■■□□ 2.02
SREBF1-212ENST00000478616 ADGRB1O14514 1584 aa27.64■■■□□ 2.01
SREBF1-212ENST00000478616 ABCC11Q96J66 1382 aa27.63■■■□□ 2.01
SREBF1-212ENST00000478616 CFAP70Q5T0N1 1121 aa27.63■■■□□ 2.01
SREBF1-212ENST00000478616 YTHDC2Q9H6S0 1430 aaKnown RBP27.63■■■□□ 2.01
SREBF1-212ENST00000478616 CDC42BPGQ6DT37 1551 aa27.6■■■□□ 2.01
SREBF1-212ENST00000478616 C1orf167Q5SNV9 1468 aa27.59■■■□□ 2.01
SREBF1-212ENST00000478616 WAPLQ7Z5K2 1190 aa27.59■■■□□ 2.01
SREBF1-212ENST00000478616 STK26Q9P289 416 aa27.59■■■□□ 2.01
SREBF1-212ENST00000478616 SHPRHQ149N8 1683 aa27.56■■■□□ 2
SREBF1-212ENST00000478616 RGS17Q9UGC6 210 aaPredicted RBP27.54■■■□□ 2
SREBF1-212ENST00000478616 DDX17Q92841 729 aaKnown RBP27.53■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms