RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.72■■■□□ 2.83
COL9A3-211ENST00000477612 XIRP1Q702N8 1843 aaKnown RBP32.71■■■□□ 2.83
COL9A3-211ENST00000477612 TRPM2O94759 1503 aa32.71■■■□□ 2.83
COL9A3-211ENST00000477612 TRIM52Q96A61 297 aa32.69■■■□□ 2.82
COL9A3-211ENST00000477612 SLC26A8Q96RN1 970 aa32.69■■■□□ 2.82
COL9A3-211ENST00000477612 TOM1O60784 492 aa32.68■■■□□ 2.82
COL9A3-211ENST00000477612 KCNA6P17658 529 aa32.67■■■□□ 2.82
COL9A3-211ENST00000477612 CLTCL1P53675 1640 aa32.66■■■□□ 2.82
COL9A3-211ENST00000477612 ALKQ9UM73 1620 aa32.66■■■□□ 2.82
COL9A3-211ENST00000477612 CHD2O14647 1828 aaKnown RBP32.66■■■□□ 2.82
COL9A3-211ENST00000477612 NWD1Q149M9 1564 aa32.65■■■□□ 2.82
COL9A3-211ENST00000477612 KIF1BO60333 1816 aa32.65■■■□□ 2.82
COL9A3-211ENST00000477612 PPP1R15AO75807 674 aaPredicted RBP32.63■■■□□ 2.81
COL9A3-211ENST00000477612 SLC4A1APQ9BWU0 796 aaKnown RBP32.62■■■□□ 2.81
COL9A3-211ENST00000477612 TBX22Q9Y458 520 aa32.62■■■□□ 2.81
COL9A3-211ENST00000477612 BCANQ96GW7 911 aa32.59■■■□□ 2.81
COL9A3-211ENST00000477612 ADAMTS13Q76LX8 1427 aa32.59■■■□□ 2.81
COL9A3-211ENST00000477612 DIP2AQ14689 1571 aa32.58■■■□□ 2.81
COL9A3-211ENST00000477612 ACIN1Q9UKV3 1341 aaKnown RBP32.58■■■□□ 2.81
COL9A3-211ENST00000477612 NKTRP30414 1462 aaKnown RBP32.58■■■□□ 2.81
COL9A3-211ENST00000477612 NUTM2DQ5VT03 806 aaPredicted RBP32.55■■■□□ 2.8
COL9A3-211ENST00000477612 PIK3R4Q99570 1358 aa32.53■■■□□ 2.8
COL9A3-211ENST00000477612 SETD5Q9C0A6 1442 aa32.52■■■□□ 2.8
COL9A3-211ENST00000477612 TMEM94Q12767 1356 aa32.52■■■□□ 2.8
COL9A3-211ENST00000477612 NEXMIFQ5QGS0 1516 aa32.51■■■□□ 2.8
COL9A3-211ENST00000477612 PIP4K2BP78356 416 aa32.51■■■□□ 2.79
COL9A3-211ENST00000477612 NRXN3Q9Y4C0 1643 aa32.51■■■□□ 2.79
COL9A3-211ENST00000477612 SETBP1Q9Y6X0 1596 aa32.5■■■□□ 2.79
COL9A3-211ENST00000477612 ZNF326Q5BKZ1 582 aaKnown RBP32.49■■■□□ 2.79
COL9A3-211ENST00000477612 PROSER2Q86WR7 435 aaPredicted RBP32.49■■■□□ 2.79
COL9A3-211ENST00000477612 MPHOSPH9Q99550 1183 aa32.49■■■□□ 2.79
COL9A3-211ENST00000477612 SENP3Q9H4L4 574 aaPredicted RBP32.49■■■□□ 2.79
COL9A3-211ENST00000477612 SCAF1Q9H7N4 1312 aaKnown RBP32.46■■■□□ 2.79
COL9A3-211ENST00000477612 HSPA1LP34931 641 aa32.42■■■□□ 2.78
COL9A3-211ENST00000477612 NCOA3Q9Y6Q9 1424 aa32.42■■■□□ 2.78
COL9A3-211ENST00000477612 FOXD1Q16676 465 aa32.41■■■□□ 2.78
COL9A3-211ENST00000477612 RPGRIP1LQ68CZ1 1315 aa32.4■■■□□ 2.78
COL9A3-211ENST00000477612 PPLO60437 1756 aa32.39■■■□□ 2.78
COL9A3-211ENST00000477612 PTPRUQ92729 1446 aa32.38■■■□□ 2.77
COL9A3-211ENST00000477612 RAB3GAP2Q9H2M9 1393 aa32.38■■■□□ 2.77
COL9A3-211ENST00000477612 RBM33Q96EV2 1170 aaKnown RBP32.37■■■□□ 2.77
COL9A3-211ENST00000477612 CCDC144AA2RUR9 1427 aa32.35■■■□□ 2.77
COL9A3-211ENST00000477612 XRN1Q8IZH2 1706 aaKnown RBP32.35■■■□□ 2.77
COL9A3-211ENST00000477612 VGFO15240 615 aaPredicted RBP32.35■■■□□ 2.77
COL9A3-211ENST00000477612 AMOTL2Q9Y2J4 779 aa32.34■■■□□ 2.77
COL9A3-211ENST00000477612 FAM135BQ49AJ0 1406 aa32.34■■■□□ 2.77
COL9A3-211ENST00000477612 MSH6P52701 1360 aa32.33■■■□□ 2.77
COL9A3-211ENST00000477612 SETD1AO15047 1707 aaKnown RBP32.31■■■□□ 2.76
COL9A3-211ENST00000477612 HRCP23327 699 aa32.31■■■□□ 2.76
COL9A3-211ENST00000477612 METP08581 1390 aa32.31■■■□□ 2.76
COL9A3-211ENST00000477612 SPATA31E1Q6ZUB1 1445 aa32.3■■■□□ 2.76
COL9A3-211ENST00000477612 IFT172Q9UG01 1749 aa32.28■■■□□ 2.76
COL9A3-211ENST00000477612 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.26■■■□□ 2.76
COL9A3-211ENST00000477612 ROBO1Q9Y6N7 1651 aa32.25■■■□□ 2.75
COL9A3-211ENST00000477612 DISP3Q9P2K9 1392 aa32.24■■■□□ 2.75
COL9A3-211ENST00000477612 C19orf44Q9H6X5 657 aa32.23■■■□□ 2.75
COL9A3-211ENST00000477612 SLAIN2Q9P270 581 aa32.21■■■□□ 2.75
COL9A3-211ENST00000477612 ANKRD30BQ9BXX2 1392 aa32.19■■■□□ 2.74
COL9A3-211ENST00000477612 RGL3Q3MIN7 710 aa32.17■■■□□ 2.74
COL9A3-211ENST00000477612 PRAG1Q86YV5 1406 aa32.17■■■□□ 2.74
COL9A3-211ENST00000477612 CADPS2Q86UW7 1296 aa32.16■■■□□ 2.74
COL9A3-211ENST00000477612 C14orf37Q86TY3 774 aa32.15■■■□□ 2.74
COL9A3-211ENST00000477612 DCCP43146 1447 aa32.15■■■□□ 2.74
COL9A3-211ENST00000477612 ADGRF5Q8IZF2 1346 aa32.14■■■□□ 2.74
COL9A3-211ENST00000477612 MED1Q15648 1581 aaPredicted RBP32.12■■■□□ 2.73
COL9A3-211ENST00000477612 PTCH1Q13635 1447 aa32.11■■■□□ 2.73
COL9A3-211ENST00000477612 ATF3P18847 181 aa32.1■■■□□ 2.73
COL9A3-211ENST00000477612 NALCNQ8IZF0 1738 aa32.08■■■□□ 2.73
COL9A3-211ENST00000477612 PIK3C2GO75747 1445 aa32.07■■■□□ 2.72
COL9A3-211ENST00000477612 ADGRL3Q9HAR2 1447 aa32.07■■■□□ 2.72
COL9A3-211ENST00000477612 PHLPP1O60346 1717 aa32.06■■■□□ 2.72
COL9A3-211ENST00000477612 ROBO2Q9HCK4 1378 aa32.04■■■□□ 2.72
COL9A3-211ENST00000477612 NRXN1Q9ULB1 1477 aa32.03■■■□□ 2.72
COL9A3-211ENST00000477612 MYOM2P54296 1465 aa32.03■■■□□ 2.72
COL9A3-211ENST00000477612 MST1RQ04912 1400 aa32■■■□□ 2.71
COL9A3-211ENST00000477612 ILDR2Q71H61 639 aa32■■■□□ 2.71
COL9A3-211ENST00000477612 AHDC1Q5TGY3 1603 aaPredicted RBP32■■■□□ 2.71
COL9A3-211ENST00000477612 KNDC1Q76NI1 1749 aa31.98■■■□□ 2.71
COL9A3-211ENST00000477612 COL16A1Q07092 1604 aaPredicted RBP31.98■■■□□ 2.71
COL9A3-211ENST00000477612 ASXL1Q8IXJ9 1541 aa31.98■■■□□ 2.71
COL9A3-211ENST00000477612 TECPR2O15040 1411 aa31.98■■■□□ 2.71
COL9A3-211ENST00000477612 C14orf93Q9H972 538 aaKnown RBP31.96■■■□□ 2.71
COL9A3-211ENST00000477612 LAMC1P11047 1609 aa31.96■■■□□ 2.71
COL9A3-211ENST00000477612 BRINP3Q76B58 766 aa31.95■■■□□ 2.71
COL9A3-211ENST00000477612 LRPPRCP42704 1394 aaKnown RBP31.94■■■□□ 2.7
COL9A3-211ENST00000477612 ABCC11Q96J66 1382 aa31.94■■■□□ 2.7
COL9A3-211ENST00000477612 NHSL1Q5SYE7 1610 aa31.9■■■□□ 2.7
COL9A3-211ENST00000477612 TMEM132EQ6IEE7 984 aa31.89■■■□□ 2.7
COL9A3-211ENST00000477612 STAC3Q96MF2 364 aa31.89■■■□□ 2.7
COL9A3-211ENST00000477612 JCADQ9P266 1359 aa31.89■■■□□ 2.7
COL9A3-211ENST00000477612 YTHDC2Q9H6S0 1430 aaKnown RBP31.88■■■□□ 2.69
COL9A3-211ENST00000477612 SIRT1Q96EB6 747 aa31.87■■■□□ 2.69
COL9A3-211ENST00000477612 C1orf167Q5SNV9 1468 aa31.86■■■□□ 2.69
COL9A3-211ENST00000477612 CFAP70Q5T0N1 1121 aa31.86■■■□□ 2.69
COL9A3-211ENST00000477612 SHPRHQ149N8 1683 aa31.84■■■□□ 2.69
COL9A3-211ENST00000477612 STK26Q9P289 416 aa31.84■■■□□ 2.69
COL9A3-211ENST00000477612 CDC42BPGQ6DT37 1551 aa31.84■■■□□ 2.69
COL9A3-211ENST00000477612 DHX57Q6P158 1386 aaKnown RBP31.81■■■□□ 2.68
COL9A3-211ENST00000477612 WAPLQ7Z5K2 1190 aa31.81■■■□□ 2.68
COL9A3-211ENST00000477612 PHF23Q9BUL5 403 aaPredicted RBP31.81■■■□□ 2.68
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms