RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 SENP3Q9H4L4 574 aaPredicted RBP32.89■■■□□ 2.86
LIME1-203ENST00000465591 XIRP1Q702N8 1843 aaKnown RBP32.88■■■□□ 2.85
LIME1-203ENST00000465591 PLEKHG1Q9ULL1 1385 aa32.83■■■□□ 2.85
LIME1-203ENST00000465591 NUTM2DQ5VT03 806 aaPredicted RBP32.82■■■□□ 2.84
LIME1-203ENST00000465591 TRIM52Q96A61 297 aa32.82■■■□□ 2.84
LIME1-203ENST00000465591 CLTCL1P53675 1640 aa32.81■■■□□ 2.84
LIME1-203ENST00000465591 TOM1O60784 492 aa32.8■■■□□ 2.84
LIME1-203ENST00000465591 PPP1R15AO75807 674 aaPredicted RBP32.8■■■□□ 2.84
LIME1-203ENST00000465591 BCANQ96GW7 911 aa32.8■■■□□ 2.84
LIME1-203ENST00000465591 TRPM2O94759 1503 aa32.79■■■□□ 2.84
LIME1-203ENST00000465591 PIP4K2BP78356 416 aa32.79■■■□□ 2.84
LIME1-203ENST00000465591 KCNA6P17658 529 aa32.78■■■□□ 2.84
LIME1-203ENST00000465591 NWD1Q149M9 1564 aa32.77■■■□□ 2.84
LIME1-203ENST00000465591 SCAF1Q9H7N4 1312 aaKnown RBP32.77■■■□□ 2.84
LIME1-203ENST00000465591 HDGFP51858 240 aaKnown RBP32.76■■■□□ 2.83
LIME1-203ENST00000465591 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.76■■■□□ 2.83
LIME1-203ENST00000465591 ADAMTS13Q76LX8 1427 aa32.74■■■□□ 2.83
LIME1-203ENST00000465591 CHD2O14647 1828 aaKnown RBP32.74■■■□□ 2.83
LIME1-203ENST00000465591 SLC4A1APQ9BWU0 796 aaKnown RBP32.71■■■□□ 2.83
LIME1-203ENST00000465591 TMEM94Q12767 1356 aa32.7■■■□□ 2.83
LIME1-203ENST00000465591 RBM33Q96EV2 1170 aaKnown RBP32.69■■■□□ 2.82
LIME1-203ENST00000465591 KIF1BO60333 1816 aa32.69■■■□□ 2.82
LIME1-203ENST00000465591 NKTRP30414 1462 aaKnown RBP32.68■■■□□ 2.82
LIME1-203ENST00000465591 TBX22Q9Y458 520 aa32.68■■■□□ 2.82
LIME1-203ENST00000465591 HSPA1LP34931 641 aa32.67■■■□□ 2.82
LIME1-203ENST00000465591 PROSER2Q86WR7 435 aaPredicted RBP32.66■■■□□ 2.82
LIME1-203ENST00000465591 NRXN3Q9Y4C0 1643 aa32.66■■■□□ 2.82
LIME1-203ENST00000465591 DIP2AQ14689 1571 aa32.65■■■□□ 2.82
LIME1-203ENST00000465591 FOXD1Q16676 465 aa32.64■■■□□ 2.82
LIME1-203ENST00000465591 ZNF326Q5BKZ1 582 aaKnown RBP32.64■■■□□ 2.82
LIME1-203ENST00000465591 NEXMIFQ5QGS0 1516 aa32.64■■■□□ 2.82
LIME1-203ENST00000465591 SETBP1Q9Y6X0 1596 aa32.59■■■□□ 2.81
LIME1-203ENST00000465591 SETD5Q9C0A6 1442 aa32.57■■■□□ 2.8
LIME1-203ENST00000465591 MPHOSPH9Q99550 1183 aa32.56■■■□□ 2.8
LIME1-203ENST00000465591 PTPRUQ92729 1446 aa32.56■■■□□ 2.8
LIME1-203ENST00000465591 PIK3R4Q99570 1358 aa32.55■■■□□ 2.8
LIME1-203ENST00000465591 DISP3Q9P2K9 1392 aa32.54■■■□□ 2.8
LIME1-203ENST00000465591 XRN1Q8IZH2 1706 aaKnown RBP32.48■■■□□ 2.79
LIME1-203ENST00000465591 PPLO60437 1756 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 METP08581 1390 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 RAB3GAP2Q9H2M9 1393 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 AMOTL2Q9Y2J4 779 aa32.47■■■□□ 2.79
LIME1-203ENST00000465591 MSH6P52701 1360 aa32.46■■■□□ 2.79
LIME1-203ENST00000465591 FAM135BQ49AJ0 1406 aa32.44■■■□□ 2.78
LIME1-203ENST00000465591 ROBO1Q9Y6N7 1651 aa32.43■■■□□ 2.78
LIME1-203ENST00000465591 SETD1AO15047 1707 aaKnown RBP32.43■■■□□ 2.78
LIME1-203ENST00000465591 CCDC144AA2RUR9 1427 aa32.43■■■□□ 2.78
LIME1-203ENST00000465591 NCOA3Q9Y6Q9 1424 aa32.42■■■□□ 2.78
LIME1-203ENST00000465591 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.4■■■□□ 2.78
LIME1-203ENST00000465591 RPGRIP1LQ68CZ1 1315 aa32.4■■■□□ 2.78
LIME1-203ENST00000465591 SPATA31E1Q6ZUB1 1445 aa32.39■■■□□ 2.78
LIME1-203ENST00000465591 VGFO15240 615 aaPredicted RBP32.38■■■□□ 2.77
LIME1-203ENST00000465591 MED1Q15648 1581 aaPredicted RBP32.37■■■□□ 2.77
LIME1-203ENST00000465591 ILDR2Q71H61 639 aa32.36■■■□□ 2.77
LIME1-203ENST00000465591 IFT172Q9UG01 1749 aa32.35■■■□□ 2.77
LIME1-203ENST00000465591 ACIN1Q9UKV3 1341 aaKnown RBP32.35■■■□□ 2.77
LIME1-203ENST00000465591 C14orf37Q86TY3 774 aa32.35■■■□□ 2.77
LIME1-203ENST00000465591 SLAIN2Q9P270 581 aa32.35■■■□□ 2.77
LIME1-203ENST00000465591 RGL3Q3MIN7 710 aa32.33■■■□□ 2.77
LIME1-203ENST00000465591 C19orf44Q9H6X5 657 aa32.31■■■□□ 2.76
LIME1-203ENST00000465591 ADGRF5Q8IZF2 1346 aa32.29■■■□□ 2.76
LIME1-203ENST00000465591 CADPS2Q86UW7 1296 aa32.25■■■□□ 2.75
LIME1-203ENST00000465591 NALCNQ8IZF0 1738 aa32.24■■■□□ 2.75
LIME1-203ENST00000465591 ATF3P18847 181 aa32.24■■■□□ 2.75
LIME1-203ENST00000465591 PHLPP1O60346 1717 aa32.23■■■□□ 2.75
LIME1-203ENST00000465591 ANKRD30BQ9BXX2 1392 aa32.21■■■□□ 2.75
LIME1-203ENST00000465591 ROBO2Q9HCK4 1378 aa32.21■■■□□ 2.75
LIME1-203ENST00000465591 DCCP43146 1447 aa32.21■■■□□ 2.75
LIME1-203ENST00000465591 PTCH1Q13635 1447 aa32.2■■■□□ 2.75
LIME1-203ENST00000465591 ADGRL3Q9HAR2 1447 aa32.2■■■□□ 2.75
LIME1-203ENST00000465591 PRAG1Q86YV5 1406 aa32.18■■■□□ 2.74
LIME1-203ENST00000465591 HRCP23327 699 aa32.18■■■□□ 2.74
LIME1-203ENST00000465591 ASXL1Q8IXJ9 1541 aa32.16■■■□□ 2.74
LIME1-203ENST00000465591 COL16A1Q07092 1604 aaPredicted RBP32.16■■■□□ 2.74
LIME1-203ENST00000465591 PIK3C2GO75747 1445 aa32.16■■■□□ 2.74
LIME1-203ENST00000465591 MST1RQ04912 1400 aa32.16■■■□□ 2.74
LIME1-203ENST00000465591 BRINP3Q76B58 766 aa32.12■■■□□ 2.73
LIME1-203ENST00000465591 AHDC1Q5TGY3 1603 aaPredicted RBP32.11■■■□□ 2.73
LIME1-203ENST00000465591 NRXN1Q9ULB1 1477 aa32.1■■■□□ 2.73
LIME1-203ENST00000465591 TMEM132EQ6IEE7 984 aa32.08■■■□□ 2.73
LIME1-203ENST00000465591 MYOM2P54296 1465 aa32.08■■■□□ 2.73
LIME1-203ENST00000465591 PHF23Q9BUL5 403 aaPredicted RBP32.05■■■□□ 2.72
LIME1-203ENST00000465591 LRPPRCP42704 1394 aaKnown RBP32.05■■■□□ 2.72
LIME1-203ENST00000465591 KNDC1Q76NI1 1749 aa32.04■■■□□ 2.72
LIME1-203ENST00000465591 TECPR2O15040 1411 aa32.04■■■□□ 2.72
LIME1-203ENST00000465591 STK26Q9P289 416 aa32.04■■■□□ 2.72
LIME1-203ENST00000465591 JCADQ9P266 1359 aa32.03■■■□□ 2.72
LIME1-203ENST00000465591 NHSL1Q5SYE7 1610 aa32.02■■■□□ 2.72
LIME1-203ENST00000465591 C14orf93Q9H972 538 aaKnown RBP32.01■■■□□ 2.71
LIME1-203ENST00000465591 C1orf167Q5SNV9 1468 aa32■■■□□ 2.71
LIME1-203ENST00000465591 CFAP70Q5T0N1 1121 aa32■■■□□ 2.71
LIME1-203ENST00000465591 ABCC11Q96J66 1382 aa31.99■■■□□ 2.71
LIME1-203ENST00000465591 WAPLQ7Z5K2 1190 aa31.99■■■□□ 2.71
LIME1-203ENST00000465591 RGS17Q9UGC6 210 aaPredicted RBP31.99■■■□□ 2.71
LIME1-203ENST00000465591 YTHDC2Q9H6S0 1430 aaKnown RBP31.99■■■□□ 2.71
LIME1-203ENST00000465591 PLEKHH1Q9ULM0 1364 aa31.98■■■□□ 2.71
LIME1-203ENST00000465591 LAMC1P11047 1609 aa31.98■■■□□ 2.71
LIME1-203ENST00000465591 DDX17Q92841 729 aaKnown RBP31.97■■■□□ 2.71
LIME1-203ENST00000465591 SOCS7O14512 581 aa31.96■■■□□ 2.71
LIME1-203ENST00000465591 SHPRHQ149N8 1683 aa31.95■■■□□ 2.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms