RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 PLEKHG1Q9ULL1 1385 aa29.32■■■□□ 2.28
USP40-207ENST00000450940 XIRP1Q702N8 1843 aaKnown RBP29.31■■■□□ 2.28
USP40-207ENST00000450940 SLC26A8Q96RN1 970 aa29.3■■■□□ 2.28
USP40-207ENST00000450940 KCNA6P17658 529 aa29.29■■■□□ 2.28
USP40-207ENST00000450940 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.28■■■□□ 2.28
USP40-207ENST00000450940 CHGAP10645 457 aaKnown RBP29.27■■■□□ 2.28
USP40-207ENST00000450940 NWD1Q149M9 1564 aa29.25■■■□□ 2.27
USP40-207ENST00000450940 PPP1R15AO75807 674 aaPredicted RBP29.23■■■□□ 2.27
USP40-207ENST00000450940 PIP4K2BP78356 416 aa29.23■■■□□ 2.27
USP40-207ENST00000450940 CHD2O14647 1828 aaKnown RBP29.22■■■□□ 2.27
USP40-207ENST00000450940 TBX22Q9Y458 520 aa29.22■■■□□ 2.27
USP40-207ENST00000450940 TRPM2O94759 1503 aa29.21■■■□□ 2.27
USP40-207ENST00000450940 BCANQ96GW7 911 aa29.21■■■□□ 2.27
USP40-207ENST00000450940 NKTRP30414 1462 aaKnown RBP29.2■■■□□ 2.26
USP40-207ENST00000450940 SCAF1Q9H7N4 1312 aaKnown RBP29.19■■■□□ 2.26
USP40-207ENST00000450940 TRIM52Q96A61 297 aa29.18■■■□□ 2.26
USP40-207ENST00000450940 CLTCL1P53675 1640 aa29.18■■■□□ 2.26
USP40-207ENST00000450940 ADAMTS13Q76LX8 1427 aa29.18■■■□□ 2.26
USP40-207ENST00000450940 TMEM94Q12767 1356 aa29.17■■■□□ 2.26
USP40-207ENST00000450940 HSPA1LP34931 641 aa29.17■■■□□ 2.26
USP40-207ENST00000450940 DIP2AQ14689 1571 aa29.17■■■□□ 2.26
USP40-207ENST00000450940 NUTM2DQ5VT03 806 aaPredicted RBP29.15■■■□□ 2.26
USP40-207ENST00000450940 PROSER2Q86WR7 435 aaPredicted RBP29.15■■■□□ 2.26
USP40-207ENST00000450940 KIF1BO60333 1816 aa29.13■■■□□ 2.25
USP40-207ENST00000450940 SLC4A1APQ9BWU0 796 aaKnown RBP29.12■■■□□ 2.25
USP40-207ENST00000450940 SENP3Q9H4L4 574 aaPredicted RBP29.12■■■□□ 2.25
USP40-207ENST00000450940 PIK3R4Q99570 1358 aa29.12■■■□□ 2.25
USP40-207ENST00000450940 DISP3Q9P2K9 1392 aa29.09■■■□□ 2.25
USP40-207ENST00000450940 SETBP1Q9Y6X0 1596 aa29.08■■■□□ 2.25
USP40-207ENST00000450940 NRXN3Q9Y4C0 1643 aa29.08■■■□□ 2.25
USP40-207ENST00000450940 NEXMIFQ5QGS0 1516 aa29.07■■■□□ 2.24
USP40-207ENST00000450940 ZNF326Q5BKZ1 582 aaKnown RBP29.06■■■□□ 2.24
USP40-207ENST00000450940 RBM33Q96EV2 1170 aaKnown RBP29.05■■■□□ 2.24
USP40-207ENST00000450940 NCOA3Q9Y6Q9 1424 aa29.04■■■□□ 2.24
USP40-207ENST00000450940 FAM135BQ49AJ0 1406 aa29.03■■■□□ 2.24
USP40-207ENST00000450940 ACIN1Q9UKV3 1341 aaKnown RBP29.02■■■□□ 2.24
USP40-207ENST00000450940 PTPRUQ92729 1446 aa29■■■□□ 2.23
USP40-207ENST00000450940 MSH6P52701 1360 aa29■■■□□ 2.23
USP40-207ENST00000450940 MPHOSPH9Q99550 1183 aa28.98■■■□□ 2.23
USP40-207ENST00000450940 SETD5Q9C0A6 1442 aa28.97■■■□□ 2.23
USP40-207ENST00000450940 AMOTL2Q9Y2J4 779 aa28.96■■■□□ 2.23
USP40-207ENST00000450940 XRN1Q8IZH2 1706 aaKnown RBP28.96■■■□□ 2.23
USP40-207ENST00000450940 RPGRIP1LQ68CZ1 1315 aa28.95■■■□□ 2.23
USP40-207ENST00000450940 FOXD1Q16676 465 aa28.95■■■□□ 2.22
USP40-207ENST00000450940 ROBO1Q9Y6N7 1651 aa28.93■■■□□ 2.22
USP40-207ENST00000450940 VGFO15240 615 aaPredicted RBP28.93■■■□□ 2.22
USP40-207ENST00000450940 PPLO60437 1756 aa28.93■■■□□ 2.22
USP40-207ENST00000450940 METP08581 1390 aa28.92■■■□□ 2.22
USP40-207ENST00000450940 SLAIN2Q9P270 581 aa28.91■■■□□ 2.22
USP40-207ENST00000450940 MED1Q15648 1581 aaPredicted RBP28.91■■■□□ 2.22
USP40-207ENST00000450940 ILDR2Q71H61 639 aa28.9■■■□□ 2.22
USP40-207ENST00000450940 SIPA1L2Q9P2F8 1722 aaPredicted RBP28.9■■■□□ 2.22
USP40-207ENST00000450940 C19orf44Q9H6X5 657 aa28.89■■■□□ 2.22
USP40-207ENST00000450940 CCDC144AA2RUR9 1427 aa28.88■■■□□ 2.21
USP40-207ENST00000450940 SETD1AO15047 1707 aaKnown RBP28.88■■■□□ 2.21
USP40-207ENST00000450940 SPATA31E1Q6ZUB1 1445 aa28.86■■■□□ 2.21
USP40-207ENST00000450940 C14orf37Q86TY3 774 aa28.84■■■□□ 2.21
USP40-207ENST00000450940 RAB3GAP2Q9H2M9 1393 aa28.84■■■□□ 2.21
USP40-207ENST00000450940 CADPS2Q86UW7 1296 aa28.83■■■□□ 2.21
USP40-207ENST00000450940 IFT172Q9UG01 1749 aa28.8■■■□□ 2.2
USP40-207ENST00000450940 DCCP43146 1447 aa28.8■■■□□ 2.2
USP40-207ENST00000450940 ATF3P18847 181 aa28.79■■■□□ 2.2
USP40-207ENST00000450940 PRAG1Q86YV5 1406 aa28.78■■■□□ 2.2
USP40-207ENST00000450940 HRCP23327 699 aa28.76■■■□□ 2.19
USP40-207ENST00000450940 PHLPP1O60346 1717 aa28.76■■■□□ 2.19
USP40-207ENST00000450940 ANKRD30BQ9BXX2 1392 aa28.75■■■□□ 2.19
USP40-207ENST00000450940 RGL3Q3MIN7 710 aa28.74■■■□□ 2.19
USP40-207ENST00000450940 PTCH1Q13635 1447 aa28.74■■■□□ 2.19
USP40-207ENST00000450940 ADGRF5Q8IZF2 1346 aa28.73■■■□□ 2.19
USP40-207ENST00000450940 ADGRL3Q9HAR2 1447 aa28.73■■■□□ 2.19
USP40-207ENST00000450940 NALCNQ8IZF0 1738 aa28.71■■■□□ 2.19
USP40-207ENST00000450940 COL16A1Q07092 1604 aaPredicted RBP28.69■■■□□ 2.18
USP40-207ENST00000450940 AHDC1Q5TGY3 1603 aaPredicted RBP28.69■■■□□ 2.18
USP40-207ENST00000450940 ROBO2Q9HCK4 1378 aa28.68■■■□□ 2.18
USP40-207ENST00000450940 MST1RQ04912 1400 aa28.68■■■□□ 2.18
USP40-207ENST00000450940 SOCS7O14512 581 aa28.67■■■□□ 2.18
USP40-207ENST00000450940 BRINP3Q76B58 766 aa28.65■■■□□ 2.18
USP40-207ENST00000450940 PIK3C2GO75747 1445 aa28.65■■■□□ 2.18
USP40-207ENST00000450940 JCADQ9P266 1359 aa28.63■■■□□ 2.17
USP40-207ENST00000450940 PHF23Q9BUL5 403 aaPredicted RBP28.63■■■□□ 2.17
USP40-207ENST00000450940 NRXN1Q9ULB1 1477 aa28.61■■■□□ 2.17
USP40-207ENST00000450940 ASXL1Q8IXJ9 1541 aa28.61■■■□□ 2.17
USP40-207ENST00000450940 TECPR2O15040 1411 aa28.6■■■□□ 2.17
USP40-207ENST00000450940 MYOM2P54296 1465 aa28.59■■■□□ 2.17
USP40-207ENST00000450940 NHSL1Q5SYE7 1610 aa28.58■■■□□ 2.17
USP40-207ENST00000450940 LRPPRCP42704 1394 aaKnown RBP28.58■■■□□ 2.17
USP40-207ENST00000450940 RGS17Q9UGC6 210 aaPredicted RBP28.57■■■□□ 2.16
USP40-207ENST00000450940 ABCC11Q96J66 1382 aa28.57■■■□□ 2.16
USP40-207ENST00000450940 KNDC1Q76NI1 1749 aa28.57■■■□□ 2.16
USP40-207ENST00000450940 SHPRHQ149N8 1683 aa28.55■■■□□ 2.16
USP40-207ENST00000450940 C1orf167Q5SNV9 1468 aa28.55■■■□□ 2.16
USP40-207ENST00000450940 C14orf93Q9H972 538 aaKnown RBP28.55■■■□□ 2.16
USP40-207ENST00000450940 LAMC1P11047 1609 aa28.53■■■□□ 2.16
USP40-207ENST00000450940 TMEM132EQ6IEE7 984 aa28.52■■■□□ 2.16
USP40-207ENST00000450940 SPATA31A6Q5VVP1 1343 aa28.51■■■□□ 2.15
USP40-207ENST00000450940 YTHDC2Q9H6S0 1430 aaKnown RBP28.51■■■□□ 2.15
USP40-207ENST00000450940 CDC42BPGQ6DT37 1551 aa28.5■■■□□ 2.15
USP40-207ENST00000450940 STK26Q9P289 416 aa28.5■■■□□ 2.15
USP40-207ENST00000450940 SIRT1Q96EB6 747 aa28.49■■■□□ 2.15
USP40-207ENST00000450940 CFAP70Q5T0N1 1121 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms