RNA–Protein interactions for RNA: ENST00000419964.1

EPHA4-205, Transcript of EPH receptor A4, humanhuman

TSL 4

Gene EPHA4, Length 552 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-205ENST00000419964 MARVELD3Q96A59 401 aa11.11□□□□□ -0.63
EPHA4-205ENST00000419964 KCNK17Q96T54 332 aa11.11□□□□□ -0.63
EPHA4-205ENST00000419964 CARMIL1Q5VZK9 1371 aa11.11□□□□□ -0.63
EPHA4-205ENST00000419964 MRC2Q9UBG0 1479 aa11.11□□□□□ -0.63
EPHA4-205ENST00000419964 VPS8Q8N3P4 1428 aa11.1□□□□□ -0.63
EPHA4-205ENST00000419964 WDR97A6NE52 1622 aa11.09□□□□□ -0.63
EPHA4-205ENST00000419964 TMEM132AQ24JP5 1023 aa11.08□□□□□ -0.64
EPHA4-205ENST00000419964 ADGRG1Q9Y653 693 aa11.08□□□□□ -0.64
EPHA4-205ENST00000419964 FAM205CA6NFA0 338 aa11.07□□□□□ -0.64
EPHA4-205ENST00000419964 KDM4CQ9H3R0 1056 aa11.07□□□□□ -0.64
EPHA4-205ENST00000419964 GPBP1L1Q9HC44 474 aaPredicted RBP11.07□□□□□ -0.64
EPHA4-205ENST00000419964 DAXXQ9UER7 740 aaPredicted RBP11.07□□□□□ -0.64
EPHA4-205ENST00000419964 ARHGAP33O14559 1287 aa11.06□□□□□ -0.64
EPHA4-205ENST00000419964 PBX2P40425 430 aa11.06□□□□□ -0.64
EPHA4-205ENST00000419964 TTLL12Q14166 644 aaPredicted RBP11.06□□□□□ -0.64
EPHA4-205ENST00000419964 METTL3Q86U44 580 aaKnown RBP11.06□□□□□ -0.64
EPHA4-205ENST00000419964 RBM46Q8TBY0 533 aaKnown RBP11.06□□□□□ -0.64
EPHA4-205ENST00000419964 RAD54L2Q9Y4B4 1467 aa11.06□□□□□ -0.64
EPHA4-205ENST00000419964 TRIM6-TRIM34B2RNG4 842 aa11.05□□□□□ -0.64
EPHA4-205ENST00000419964 FAM161AQ3B820 660 aa11.05□□□□□ -0.64
EPHA4-205ENST00000419964 PACS2Q86VP3 889 aa11.05□□□□□ -0.64
EPHA4-205ENST00000419964 ABCA5Q8WWZ7 1642 aa11.05□□□□□ -0.64
EPHA4-205ENST00000419964 ONECUT3O60422 494 aaPredicted RBP11.04□□□□□ -0.64
EPHA4-205ENST00000419964 ZNF687Q8N1G0 1237 aa11.04□□□□□ -0.64
EPHA4-205ENST00000419964 GAPVD1Q14C86 1478 aa11.04□□□□□ -0.64
EPHA4-205ENST00000419964 WDR62O43379 1518 aa11.04□□□□□ -0.64
EPHA4-205ENST00000419964 PSEN2P49810 448 aa11.03□□□□□ -0.64
EPHA4-205ENST00000419964 PARP9Q8IXQ6 854 aa11.03□□□□□ -0.64
EPHA4-205ENST00000419964 PXYLP1Q8TE99 480 aa11.03□□□□□ -0.64
EPHA4-205ENST00000419964 TSKSQ9UJT2 592 aa11.03□□□□□ -0.64
EPHA4-205ENST00000419964 TARBP1Q13395 1621 aaKnown RBP11.02□□□□□ -0.64
EPHA4-205ENST00000419964 IFT140Q96RY7 1462 aa11.02□□□□□ -0.65
EPHA4-205ENST00000419964 NBPF26B4DH59 902 aa11.02□□□□□ -0.65
EPHA4-205ENST00000419964 HRCP23327 699 aa11.02□□□□□ -0.65
EPHA4-205ENST00000419964 CLCN1P35523 988 aa11.02□□□□□ -0.65
EPHA4-205ENST00000419964 FAM198AQ9UFP1 575 aa11.02□□□□□ -0.65
EPHA4-205ENST00000419964 ERCC6Q03468 1493 aa11.01□□□□□ -0.65
EPHA4-205ENST00000419964 PHOX2BQ99453 314 aa11.01□□□□□ -0.65
EPHA4-205ENST00000419964 ZBED2Q9BTP6 218 aa11.01□□□□□ -0.65
EPHA4-205ENST00000419964 EFCAB5A4FU69 1503 aa11□□□□□ -0.65
EPHA4-205ENST00000419964 ZEB1P37275 1124 aaPredicted RBP11□□□□□ -0.65
EPHA4-205ENST00000419964 MDM2Q00987 491 aaPredicted RBP11□□□□□ -0.65
EPHA4-205ENST00000419964 PROX2Q3B8N5 592 aa11□□□□□ -0.65
EPHA4-205ENST00000419964 HS3ST6Q96QI5 342 aa11□□□□□ -0.65
EPHA4-205ENST00000419964 SLC4A5Q9BY07 1137 aa11□□□□□ -0.65
EPHA4-205ENST00000419964 GPCPD1Q9NPB8 672 aa11□□□□□ -0.65
EPHA4-205ENST00000419964 GIGYF2Q6Y7W6 1299 aaKnown RBP10.99□□□□□ -0.65
EPHA4-205ENST00000419964 TATDN2Q93075 761 aa10.99□□□□□ -0.65
EPHA4-205ENST00000419964 AXIN2Q9Y2T1 843 aa10.99□□□□□ -0.65
EPHA4-205ENST00000419964 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.98□□□□□ -0.65
EPHA4-205ENST00000419964 POTEEQ6S8J3 1075 aa10.98□□□□□ -0.65
EPHA4-205ENST00000419964 NUDT18Q6ZVK8 323 aa10.98□□□□□ -0.65
EPHA4-205ENST00000419964 EYA1Q99502 592 aa10.98□□□□□ -0.65
EPHA4-205ENST00000419964 PNMA3Q9UL41 463 aa10.98□□□□□ -0.65
EPHA4-205ENST00000419964 FHAD1B1AJZ9 1412 aa10.98□□□□□ -0.65
EPHA4-205ENST00000419964 ARAP1Q96P48 1450 aa10.98□□□□□ -0.65
EPHA4-205ENST00000419964 CTTNBP2Q8WZ74 1663 aa10.98□□□□□ -0.65
EPHA4-205ENST00000419964 LCE2DQ5TA82 110 aaPredicted RBP10.97□□□□□ -0.65
EPHA4-205ENST00000419964 DDRGK1Q96HY6 314 aa10.97□□□□□ -0.65
EPHA4-205ENST00000419964 KIAA1468Q9P260 1216 aa10.97□□□□□ -0.65
EPHA4-205ENST00000419964 ARHGAP35Q9NRY4 1499 aa10.96□□□□□ -0.65
EPHA4-205ENST00000419964 DMRTA1Q5VZB9 504 aa10.96□□□□□ -0.65
EPHA4-205ENST00000419964 IL27Q8NEV9 243 aa10.96□□□□□ -0.65
EPHA4-205ENST00000419964 TMUB1Q9BVT8 246 aa10.96□□□□□ -0.65
EPHA4-205ENST00000419964 RABGEF1Q9UJ41 708 aa10.96□□□□□ -0.65
EPHA4-205ENST00000419964 MAP3K1Q13233 1512 aa10.95□□□□□ -0.66
EPHA4-205ENST00000419964 GRIN2BQ13224 1484 aa10.95□□□□□ -0.66
EPHA4-205ENST00000419964 TDRD9Q8NDG6 1382 aaKnown RBP10.95□□□□□ -0.66
EPHA4-205ENST00000419964 RCCD1A6NED2 376 aa10.95□□□□□ -0.66
EPHA4-205ENST00000419964 REPIN1Q9BWE0 567 aaKnown RBP10.95□□□□□ -0.66
EPHA4-205ENST00000419964 PBRM1Q86U86 1689 aa10.95□□□□□ -0.66
EPHA4-205ENST00000419964 POTEB3A0JP26 581 aa10.94□□□□□ -0.66
EPHA4-205ENST00000419964 DNAJB2P25686 324 aa10.94□□□□□ -0.66
EPHA4-205ENST00000419964 POTEBQ6S5H4 581 aa10.94□□□□□ -0.66
EPHA4-205ENST00000419964 NLRP7Q8WX94 980 aa10.93□□□□□ -0.66
EPHA4-205ENST00000419964 FAM117AQ9C073 453 aa10.93□□□□□ -0.66
EPHA4-205ENST00000419964 VPS9D1Q9Y2B5 631 aa10.93□□□□□ -0.66
EPHA4-205ENST00000419964 THOC2Q8NI27 1593 aaKnown RBP10.93□□□□□ -0.66
EPHA4-205ENST00000419964 C3orf80F5H4A9 247 aa10.92□□□□□ -0.66
EPHA4-205ENST00000419964 SSTR3P32745 418 aaPredicted RBP10.92□□□□□ -0.66
EPHA4-205ENST00000419964 TK2O00142 265 aa10.91□□□□□ -0.66
EPHA4-205ENST00000419964 SMAPO00193 183 aa10.91□□□□□ -0.66
EPHA4-205ENST00000419964 MS4A1P11836 297 aa10.91□□□□□ -0.66
EPHA4-205ENST00000419964 RANGAP1P46060 587 aaPredicted RBP10.91□□□□□ -0.66
EPHA4-205ENST00000419964 FAM217BQ9NTX9 383 aaPredicted RBP10.91□□□□□ -0.66
EPHA4-205ENST00000419964 AQRO60306 1485 aaKnown RBP eCLIP10.91□□□□□ -0.66
EPHA4-205ENST00000419964 FMN1Q68DA7 1419 aa10.91□□□□□ -0.66
EPHA4-205ENST00000419964 ADAMTS12P58397 1594 aa10.9□□□□□ -0.67
EPHA4-205ENST00000419964 NBPF3Q9H094 633 aa10.89□□□□□ -0.67
EPHA4-205ENST00000419964 TMEM134Q9H6X4 195 aa10.89□□□□□ -0.67
EPHA4-205ENST00000419964 LSM11P83369 360 aaKnown RBP eCLIP10.88□□□□□ -0.67
EPHA4-205ENST00000419964 PPARGC1BQ86YN6 1023 aaKnown RBP10.88□□□□□ -0.67
EPHA4-205ENST00000419964 SULF1Q8IWU6 871 aa10.88□□□□□ -0.67
EPHA4-205ENST00000419964 FYCO1Q9BQS8 1478 aa10.87□□□□□ -0.67
EPHA4-205ENST00000419964 HDGFP51858 240 aaKnown RBP10.87□□□□□ -0.67
EPHA4-205ENST00000419964 FAM98CQ17RN3 349 aaKnown RBP10.87□□□□□ -0.67
EPHA4-205ENST00000419964 MAGI1Q96QZ7 1491 aaPredicted RBP10.87□□□□□ -0.67
EPHA4-205ENST00000419964 SAMD9Q5K651 1589 aa10.86□□□□□ -0.67
EPHA4-205ENST00000419964 PLEKHG3A1L390 1219 aa10.86□□□□□ -0.67
EPHA4-205ENST00000419964 LAPTM4BQ86VI4 370 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms