RNA–Protein interactions for RNA: ENST00000419964.1

EPHA4-205, Transcript of EPH receptor A4, humanhuman

TSL 4

Gene EPHA4, Length 552 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-205ENST00000419964 AEBP2Q6ZN18 517 aaPredicted RBP24.71■■□□□ 1.55
EPHA4-205ENST00000419964 CHIC1Q5VXU3 224 aa24.48■■□□□ 1.51
EPHA4-205ENST00000419964 PHF23Q9BUL5 403 aaPredicted RBP21.51■■□□□ 1.03
EPHA4-205ENST00000419964 SENP3Q9H4L4 574 aaPredicted RBP21■□□□□ 0.95
EPHA4-205ENST00000419964 PLPPR3Q6T4P5 718 aa20.05■□□□□ 0.8
EPHA4-205ENST00000419964 FOXD1Q16676 465 aa19.4■□□□□ 0.7
EPHA4-205ENST00000419964 ADRA2BP18089 450 aa18.9■□□□□ 0.62
EPHA4-205ENST00000419964 PPP6R1Q9UPN7 881 aa18.89■□□□□ 0.61
EPHA4-205ENST00000419964 PIAS4Q8N2W9 510 aaPredicted RBP18.4■□□□□ 0.54
EPHA4-205ENST00000419964 MSH5O43196 834 aa17.84■□□□□ 0.45
EPHA4-205ENST00000419964 PPP4R3CPQ6ZMV5 832 aa17.67■□□□□ 0.42
EPHA4-205ENST00000419964 KCNA4P22459 653 aa17.58■□□□□ 0.4
EPHA4-205ENST00000419964 SCAF1Q9H7N4 1312 aaKnown RBP17.4■□□□□ 0.38
EPHA4-205ENST00000419964 NCBP3Q53F19 620 aaKnown RBP17.37■□□□□ 0.37
EPHA4-205ENST00000419964 CNKSR2Q8WXI2 1034 aa17.14■□□□□ 0.33
EPHA4-205ENST00000419964 MAPK8IP2Q13387 824 aaPredicted RBP17.04■□□□□ 0.32
EPHA4-205ENST00000419964 NPM3O75607 178 aaKnown RBP17.03■□□□□ 0.32
EPHA4-205ENST00000419964 SLC4A1APQ9BWU0 796 aaKnown RBP16.83■□□□□ 0.28
EPHA4-205ENST00000419964 DMRT2Q9Y5R5 561 aa16.79■□□□□ 0.28
EPHA4-205ENST00000419964 RNF216Q9NWF9 866 aaPredicted RBP16.73■□□□□ 0.27
EPHA4-205ENST00000419964 EHMT2Q96KQ7 1210 aa16.67■□□□□ 0.26
EPHA4-205ENST00000419964 HOXD11P31277 338 aaPredicted RBP16.56■□□□□ 0.24
EPHA4-205ENST00000419964 DNAJC5BQ9UF47 199 aa16.53■□□□□ 0.24
EPHA4-205ENST00000419964 CSRNP3Q8WYN3 585 aa16.33■□□□□ 0.2
EPHA4-205ENST00000419964 ZBTB22O15209 634 aa16.15■□□□□ 0.18
EPHA4-205ENST00000419964 FOXD4L1Q9NU39 408 aa16.13■□□□□ 0.17
EPHA4-205ENST00000419964 DCAF8L1A6NGE4 600 aa16.07■□□□□ 0.16
EPHA4-205ENST00000419964 SLC4A2P04920 1241 aa15.99■□□□□ 0.15
EPHA4-205ENST00000419964 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.82■□□□□ 0.12
EPHA4-205ENST00000419964 NISCHQ9Y2I1 1504 aa15.78■□□□□ 0.12
EPHA4-205ENST00000419964 MYCNP04198 464 aaPredicted RBP15.77■□□□□ 0.12
EPHA4-205ENST00000419964 POTEDQ86YR6 584 aa15.66■□□□□ 0.1
EPHA4-205ENST00000419964 ATXN8OSP0DMR3 200 aa15.58■□□□□ 0.08
EPHA4-205ENST00000419964 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.55■□□□□ 0.08
EPHA4-205ENST00000419964 HNRNPUL2Q1KMD3 747 aaKnown RBP15.55■□□□□ 0.08
EPHA4-205ENST00000419964 U3KPZ7 1027 aaPredicted RBP15.54■□□□□ 0.08
EPHA4-205ENST00000419964 SAMD1Q6SPF0 538 aaPredicted RBP15.48■□□□□ 0.07
EPHA4-205ENST00000419964 APLP2Q06481 763 aa15.33■□□□□ 0.04
EPHA4-205ENST00000419964 RNF39Q9H2S5 420 aa15.28■□□□□ 0.04
EPHA4-205ENST00000419964 ATF5Q9Y2D1 282 aaPredicted RBP15.25■□□□□ 0.03
EPHA4-205ENST00000419964 C1QBPQ07021 282 aaKnown RBP15.15■□□□□ 0.02
EPHA4-205ENST00000419964 ZNF219Q9P2Y4 722 aaPredicted RBP15.05■□□□□ -0
EPHA4-205ENST00000419964 SPINK5Q9NQ38 1064 aaPredicted RBP15.01□□□□□ -0.01
EPHA4-205ENST00000419964 CAPN15O75808 1086 aa14.98□□□□□ -0.01
EPHA4-205ENST00000419964 TRHP20396 242 aaPredicted RBP14.97□□□□□ -0.01
EPHA4-205ENST00000419964 POLA2Q14181 598 aa14.8□□□□□ -0.04
EPHA4-205ENST00000419964 FKBP8Q14318 412 aa14.77□□□□□ -0.05
EPHA4-205ENST00000419964 FBLN2P98095 1184 aa14.7□□□□□ -0.06
EPHA4-205ENST00000419964 ABCB7O75027 752 aa14.69□□□□□ -0.06
EPHA4-205ENST00000419964 CACNB1Q02641 598 aaPredicted RBP14.69□□□□□ -0.06
EPHA4-205ENST00000419964 ZBTB12Q9Y330 459 aaPredicted RBP14.64□□□□□ -0.07
EPHA4-205ENST00000419964 DSG3P32926 999 aa14.63□□□□□ -0.07
EPHA4-205ENST00000419964 MKRN4PQ13434 485 aaPredicted RBP14.61□□□□□ -0.07
EPHA4-205ENST00000419964 SPDYE4A6NLX3 237 aa14.49□□□□□ -0.09
EPHA4-205ENST00000419964 OSCARQ8IYS5 282 aa14.27□□□□□ -0.13
EPHA4-205ENST00000419964 PROM2Q8N271 834 aa14.27□□□□□ -0.13
EPHA4-205ENST00000419964 SPDYE2BA6NHP3 402 aa14.24□□□□□ -0.13
EPHA4-205ENST00000419964 SPDYE6P0CI01 402 aa14.24□□□□□ -0.13
EPHA4-205ENST00000419964 SPDYE2Q495Y8 402 aa14.24□□□□□ -0.13
EPHA4-205ENST00000419964 ZNF692Q9BU19 519 aaPredicted RBP14.23□□□□□ -0.13
EPHA4-205ENST00000419964 FBXO3Q9UK99 471 aa14.23□□□□□ -0.13
EPHA4-205ENST00000419964 SSUH2Q9Y2M2 353 aa14.13□□□□□ -0.15
EPHA4-205ENST00000419964 AMER1Q5JTC6 1135 aaPredicted RBP14.03□□□□□ -0.16
EPHA4-205ENST00000419964 PABPN1Q86U42 306 aaKnown RBP eCLIP14.03□□□□□ -0.16
EPHA4-205ENST00000419964 RBM42Q9BTD8 480 aaKnown RBP14□□□□□ -0.17
EPHA4-205ENST00000419964 VASPP50552 380 aaPredicted RBP13.97□□□□□ -0.17
EPHA4-205ENST00000419964 RTN4Q9NQC3 1192 aaKnown RBP13.93□□□□□ -0.18
EPHA4-205ENST00000419964 STAG3Q9UJ98 1225 aa13.93□□□□□ -0.18
EPHA4-205ENST00000419964 AKT1S1Q96B36 256 aa13.87□□□□□ -0.19
EPHA4-205ENST00000419964 CCDC180Q9P1Z9 1646 aa13.79□□□□□ -0.2
EPHA4-205ENST00000419964 IFNLR1Q8IU57 520 aaPredicted RBP13.78□□□□□ -0.2
EPHA4-205ENST00000419964 PLCD3Q8N3E9 789 aa13.75□□□□□ -0.21
EPHA4-205ENST00000419964 SPDYE1Q8NFV5 336 aaPredicted RBP13.75□□□□□ -0.21
EPHA4-205ENST00000419964 MIER1Q8N108 512 aa13.72□□□□□ -0.21
EPHA4-205ENST00000419964 REM2Q8IYK8 340 aaPredicted RBP13.71□□□□□ -0.21
EPHA4-205ENST00000419964 KLHL34Q8N239 644 aa13.7□□□□□ -0.22
EPHA4-205ENST00000419964 PLEKHG5O94827 1062 aa13.69□□□□□ -0.22
EPHA4-205ENST00000419964 CLEC11AQ9Y240 323 aa13.65□□□□□ -0.22
EPHA4-205ENST00000419964 SPOCK2Q92563 424 aa13.62□□□□□ -0.23
EPHA4-205ENST00000419964 ZBTB47Q9UFB7 747 aaPredicted RBP13.61□□□□□ -0.23
EPHA4-205ENST00000419964 PRR29P0C7W0 189 aa13.59□□□□□ -0.23
EPHA4-205ENST00000419964 PITPNM1O00562 1244 aa13.54□□□□□ -0.24
EPHA4-205ENST00000419964 CREBZFQ9NS37 354 aa13.44□□□□□ -0.26
EPHA4-205ENST00000419964 PKD2Q13563 968 aa13.43□□□□□ -0.26
EPHA4-205ENST00000419964 CIZ1Q9ULV3 898 aaPredicted RBP13.35□□□□□ -0.27
EPHA4-205ENST00000419964 ECM2O94769 699 aaPredicted RBP13.33□□□□□ -0.28
EPHA4-205ENST00000419964 MNX1P50219 401 aaPredicted RBP13.33□□□□□ -0.28
EPHA4-205ENST00000419964 NPM1P06748 294 aaKnown RBP eCLIP13.3□□□□□ -0.28
EPHA4-205ENST00000419964 NUBP1P53384 320 aa13.3□□□□□ -0.28
EPHA4-205ENST00000419964 ZCCHC6Q5VYS8 1495 aaKnown RBP13.29□□□□□ -0.28
EPHA4-205ENST00000419964 GSE1Q14687 1217 aa13.29□□□□□ -0.28
EPHA4-205ENST00000419964 DCAF8L2P0C7V8 631 aa13.28□□□□□ -0.28
EPHA4-205ENST00000419964 TRIM41Q8WV44 630 aa13.27□□□□□ -0.29
EPHA4-205ENST00000419964 CHRDL2Q6WN34 429 aa13.26□□□□□ -0.29
EPHA4-205ENST00000419964 CHADLQ6NUI6 762 aa13.25□□□□□ -0.29
EPHA4-205ENST00000419964 FXR2P51116 673 aaKnown RBP eCLIP13.24□□□□□ -0.29
EPHA4-205ENST00000419964 DCAF8Q5TAQ9 597 aa13.24□□□□□ -0.29
EPHA4-205ENST00000419964 FAM212AQ96EL1 285 aa13.24□□□□□ -0.29
EPHA4-205ENST00000419964 PRKAR2AP13861 404 aaKnown RBP13.21□□□□□ -0.29
EPHA4-205ENST00000419964 FARP1Q9Y4F1 1045 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms