RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 KIF7Q2M1P5 1343 aa12.6□□□□□ -0.39
CHD3-201ENST00000330494 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.6□□□□□ -0.39
CHD3-201ENST00000330494 RAD21O60216 631 aa12.6□□□□□ -0.39
CHD3-201ENST00000330494 AIMP1Q12904 312 aaKnown RBP12.59□□□□□ -0.39
CHD3-201ENST00000330494 USP35Q9P2H5 1018 aa12.59□□□□□ -0.39
CHD3-201ENST00000330494 CC2D2AQ9P2K1 1620 aa12.59□□□□□ -0.39
CHD3-201ENST00000330494 KIF16BQ96L93 1317 aa12.59□□□□□ -0.39
CHD3-201ENST00000330494 FBXW7Q969H0 707 aa12.58□□□□□ -0.39
CHD3-201ENST00000330494 CFTRP13569 1480 aa12.58□□□□□ -0.4
CHD3-201ENST00000330494 HDAC5Q9UQL6 1122 aa12.58□□□□□ -0.4
CHD3-201ENST00000330494 CFAP70Q5T0N1 1121 aa12.58□□□□□ -0.4
CHD3-201ENST00000330494 CENPQQ7L2Z9 268 aaPredicted RBP12.58□□□□□ -0.4
CHD3-201ENST00000330494 TSPYL4Q9UJ04 414 aa12.58□□□□□ -0.4
CHD3-201ENST00000330494 ANKRD50Q9ULJ7 1429 aa12.58□□□□□ -0.4
CHD3-201ENST00000330494 ATF3P18847 181 aa12.58□□□□□ -0.4
CHD3-201ENST00000330494 FKBP5Q13451 457 aaPredicted RBP12.58□□□□□ -0.4
CHD3-201ENST00000330494 ST18O60284 1047 aa12.57□□□□□ -0.4
CHD3-201ENST00000330494 ZBED9Q6R2W3 1325 aa12.57□□□□□ -0.4
CHD3-201ENST00000330494 PDE4AP27815 886 aa12.57□□□□□ -0.4
CHD3-201ENST00000330494 HSP90AA2PQ14568 343 aaPredicted RBP12.57□□□□□ -0.4
CHD3-201ENST00000330494 PRG4Q92954 1404 aaPredicted RBP12.57□□□□□ -0.4
CHD3-201ENST00000330494 AEBP2Q6ZN18 517 aaPredicted RBP12.57□□□□□ -0.4
CHD3-201ENST00000330494 CCDC7Q96M83 1385 aa12.56□□□□□ -0.4
CHD3-201ENST00000330494 NEXNQ0ZGT2 675 aa12.56□□□□□ -0.4
CHD3-201ENST00000330494 H3BQV1 296 aa12.56□□□□□ -0.4
CHD3-201ENST00000330494 HTATSF1O43719 755 aaKnown RBP12.56□□□□□ -0.4
CHD3-201ENST00000330494 IFFO2Q5TF58 517 aa12.56□□□□□ -0.4
CHD3-201ENST00000330494 PANK1Q8TE04 598 aa12.55□□□□□ -0.4
CHD3-201ENST00000330494 RUNDC1Q96C34 613 aa12.55□□□□□ -0.4
CHD3-201ENST00000330494 FOSBP53539 338 aa12.55□□□□□ -0.4
CHD3-201ENST00000330494 ARAP1Q96P48 1450 aa12.55□□□□□ -0.4
CHD3-201ENST00000330494 SF3A1Q15459 793 aaKnown RBP12.55□□□□□ -0.4
CHD3-201ENST00000330494 NBPF1Q3BBV0 1214 aa12.55□□□□□ -0.4
CHD3-201ENST00000330494 KLHL34Q8N239 644 aa12.55□□□□□ -0.4
CHD3-201ENST00000330494 SYAP1Q96A49 352 aaPredicted RBP12.55□□□□□ -0.4
CHD3-201ENST00000330494 MARCH6O60337 910 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 NLRP2Q9NX02 1062 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 GRIN2BQ13224 1484 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 APPP05067 770 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 GOLGA6L3A6NEY3 463 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 FAM161AQ3B820 660 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 MCTP1Q6DN14 999 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.54□□□□□ -0.4
CHD3-201ENST00000330494 MTHFSP49914 203 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 NLRP6P59044 892 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 DZIP1LQ8IYY4 767 aaKnown RBP12.54□□□□□ -0.4
CHD3-201ENST00000330494 DIAPH3Q9NSV4 1193 aa12.54□□□□□ -0.4
CHD3-201ENST00000330494 FAM177BA6PVY3 158 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 TXNDC2Q86VQ3 553 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 CASKIN1Q8WXD9 1431 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 ESCO1Q5FWF5 840 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 KIAA2012Q0VF49 1180 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 FAM184AQ8NB25 1140 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 FYCO1Q9BQS8 1478 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 ADAMTS8Q9UP79 889 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 WASHC2AQ641Q2 1341 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 ABTB2Q8N961 1025 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 PRAM1Q96QH2 718 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 LNPKQ9C0E8 428 aa12.53□□□□□ -0.4
CHD3-201ENST00000330494 PES1O00541 588 aaKnown RBP12.52□□□□□ -0.4
CHD3-201ENST00000330494 IFIT2P09913 472 aaKnown RBP12.52□□□□□ -0.4
CHD3-201ENST00000330494 NCAPD3P42695 1498 aa12.52□□□□□ -0.41
CHD3-201ENST00000330494 VPS37DQ86XT2 251 aa12.52□□□□□ -0.41
CHD3-201ENST00000330494 CDCA7LQ96GN5 454 aa12.52□□□□□ -0.41
CHD3-201ENST00000330494 ANO2Q9NQ90 1003 aa12.52□□□□□ -0.41
CHD3-201ENST00000330494 RAPGEF4Q8WZA2 1011 aa12.51□□□□□ -0.41
CHD3-201ENST00000330494 PTMSP20962 102 aa12.51□□□□□ -0.41
CHD3-201ENST00000330494 RIC3Q7Z5B4 369 aa12.51□□□□□ -0.41
CHD3-201ENST00000330494 KDM4AO75164 1064 aa12.51□□□□□ -0.41
CHD3-201ENST00000330494 TPM4P67936 248 aa12.51□□□□□ -0.41
CHD3-201ENST00000330494 SAMD1Q6SPF0 538 aaPredicted RBP12.51□□□□□ -0.41
CHD3-201ENST00000330494 SYNJ2O15056 1496 aa12.5□□□□□ -0.41
CHD3-201ENST00000330494 DDX19BQ9UMR2 479 aa12.5□□□□□ -0.41
CHD3-201ENST00000330494 SNAPC4Q5SXM2 1469 aa12.5□□□□□ -0.41
CHD3-201ENST00000330494 RAPGEF3O95398 923 aa12.5□□□□□ -0.41
CHD3-201ENST00000330494 FYB1O15117 783 aa12.5□□□□□ -0.41
CHD3-201ENST00000330494 STRN4Q9NRL3 753 aa12.5□□□□□ -0.41
CHD3-201ENST00000330494 NOC3LQ8WTT2 800 aaKnown RBP12.49□□□□□ -0.41
CHD3-201ENST00000330494 CNTLNQ9NXG0 1405 aa12.49□□□□□ -0.41
CHD3-201ENST00000330494 DDX58O95786 925 aaKnown RBP12.48□□□□□ -0.41
CHD3-201ENST00000330494 CSPP1Q1MSJ5 1256 aa12.48□□□□□ -0.41
CHD3-201ENST00000330494 NEUROD6Q96NK8 337 aa12.48□□□□□ -0.41
CHD3-201ENST00000330494 RSPH6AQ9H0K4 717 aa12.48□□□□□ -0.41
CHD3-201ENST00000330494 SCAPERQ9BY12 1400 aa12.48□□□□□ -0.41
CHD3-201ENST00000330494 G3BP1Q13283 466 aaKnown RBP eCLIP12.48□□□□□ -0.41
CHD3-201ENST00000330494 C1orf115Q9H7X2 142 aa12.48□□□□□ -0.41
CHD3-201ENST00000330494 SLC12A5Q9H2X9 1139 aa12.48□□□□□ -0.41
CHD3-201ENST00000330494 AKAP17AQ02040 695 aaKnown RBP12.48□□□□□ -0.41
CHD3-201ENST00000330494 MRC2Q9UBG0 1479 aa12.47□□□□□ -0.41
CHD3-201ENST00000330494 PHF23Q9BUL5 403 aaPredicted RBP12.47□□□□□ -0.41
CHD3-201ENST00000330494 MIA2Q96PC5 1412 aa12.47□□□□□ -0.41
CHD3-201ENST00000330494 PRM3Q9NNZ6 103 aa12.47□□□□□ -0.41
CHD3-201ENST00000330494 DDX49Q9Y6V7 483 aaKnown RBP12.47□□□□□ -0.41
CHD3-201ENST00000330494 C9orf84Q5VXU9 1444 aa12.46□□□□□ -0.41
CHD3-201ENST00000330494 TOPBP1Q92547 1522 aa12.46□□□□□ -0.41
CHD3-201ENST00000330494 WWC1Q8IX03 1113 aa12.46□□□□□ -0.41
CHD3-201ENST00000330494 API5Q9BZZ5 524 aaKnown RBP12.46□□□□□ -0.41
CHD3-201ENST00000330494 MTMR7Q9Y216 660 aa12.46□□□□□ -0.41
CHD3-201ENST00000330494 XPCQ01831 940 aaPredicted RBP12.46□□□□□ -0.42
CHD3-201ENST00000330494 CDK19Q9BWU1 502 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms