RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 Mre11Q61216 706 aa17.49■□□□□ 0.39
Nup88-201ENSMUST00000035283 Rrbp1Q99PL5 1605 aaKnown RBP17.49■□□□□ 0.39
Nup88-201ENSMUST00000035283 Ppip5k1A2ARP1 1436 aa17.48■□□□□ 0.39
Nup88-201ENSMUST00000035283 Clasp1Q80TV8 1535 aaKnown RBP17.48■□□□□ 0.39
Nup88-201ENSMUST00000035283 Tspyl2Q7TQI8 677 aa17.48■□□□□ 0.39
Nup88-201ENSMUST00000035283 Sbno1Q689Z5 1390 aa17.48■□□□□ 0.39
Nup88-201ENSMUST00000035283 Ccdc30Q8BVF4 654 aa17.47■□□□□ 0.39
Nup88-201ENSMUST00000035283 Eif2s2Q99L45 331 aaKnown RBP17.47■□□□□ 0.39
Nup88-201ENSMUST00000035283 Edc4Q3UJB9 1406 aaKnown RBP17.47■□□□□ 0.39
Nup88-201ENSMUST00000035283 Erich6D3Z6S9 713 aa17.47■□□□□ 0.39
Nup88-201ENSMUST00000035283 AknaQ80VW7 1404 aa17.46■□□□□ 0.39
Nup88-201ENSMUST00000035283 Pde4cQ3UEI1 686 aa17.46■□□□□ 0.39
Nup88-201ENSMUST00000035283 4930567H17RikQ3V0K5 233 aa17.46■□□□□ 0.39
Nup88-201ENSMUST00000035283 Ppm1gQ61074 542 aa17.46■□□□□ 0.39
Nup88-201ENSMUST00000035283 Spag9Q58A65 1321 aaKnown RBP17.46■□□□□ 0.39
Nup88-201ENSMUST00000035283 Trim30dE9PWL0 497 aa17.46■□□□□ 0.39
Nup88-201ENSMUST00000035283 Atf7ipQ7TT18 1306 aa17.45■□□□□ 0.38
Nup88-201ENSMUST00000035283 Gm32742A0A1B0GT42 1604 aa17.45■□□□□ 0.38
Nup88-201ENSMUST00000035283 Ak7Q9D2H2 614 aa17.44■□□□□ 0.38
Nup88-201ENSMUST00000035283 Usp19Q3UJD6 1360 aa17.44■□□□□ 0.38
Nup88-201ENSMUST00000035283 Sall3Q62255 1320 aa17.44■□□□□ 0.38
Nup88-201ENSMUST00000035283 Tulp4Q9JIL5 1547 aa17.44■□□□□ 0.38
Nup88-201ENSMUST00000035283 Dnmt1P13864 1620 aaKnown RBP17.43■□□□□ 0.38
Nup88-201ENSMUST00000035283 Gas2l2Q5SSG4 860 aa17.43■□□□□ 0.38
Nup88-201ENSMUST00000035283 Kif7B7ZNG0 1348 aa17.42■□□□□ 0.38
Nup88-201ENSMUST00000035283 Nlrp6Q91WS2 869 aa17.42■□□□□ 0.38
Nup88-201ENSMUST00000035283 Amer1Q7TS75 1132 aa17.41■□□□□ 0.38
Nup88-201ENSMUST00000035283 Mast1Q9R1L5 1570 aa17.41■□□□□ 0.38
Nup88-201ENSMUST00000035283 Prdm10Q3UTQ7 1184 aa17.41■□□□□ 0.38
Nup88-201ENSMUST00000035283 Mapk8ip3Q9ESN9 1337 aa17.4■□□□□ 0.38
Nup88-201ENSMUST00000035283 Gm14025A2AP89 1413 aa17.4■□□□□ 0.38
Nup88-201ENSMUST00000035283 Map3k5O35099 1380 aa17.4■□□□□ 0.38
Nup88-201ENSMUST00000035283 Ipo8Q7TMY7 1010 aa17.4■□□□□ 0.38
Nup88-201ENSMUST00000035283 Pank1Q8K4K6 548 aa17.39■□□□□ 0.37
Nup88-201ENSMUST00000035283 Zmym3Q9JLM4 1370 aa17.39■□□□□ 0.37
Nup88-201ENSMUST00000035283 ArxO35085 564 aa17.39■□□□□ 0.37
Nup88-201ENSMUST00000035283 Hsp90ab1P11499 724 aaKnown RBP17.39■□□□□ 0.37
Nup88-201ENSMUST00000035283 Os9Q8K2C7 672 aa17.38■□□□□ 0.37
Nup88-201ENSMUST00000035283 Cep170Q6A065 1588 aa17.38■□□□□ 0.37
Nup88-201ENSMUST00000035283 Fgd1P52734 960 aa17.38■□□□□ 0.37
Nup88-201ENSMUST00000035283 Robo2Q7TPD3 1470 aa17.38■□□□□ 0.37
Nup88-201ENSMUST00000035283 Golga2Q921M4 999 aa17.37■□□□□ 0.37
Nup88-201ENSMUST00000035283 Col17a1Q07563 1470 aa17.36■□□□□ 0.37
Nup88-201ENSMUST00000035283 Pdlim2Q8R1G6 349 aa17.36■□□□□ 0.37
Nup88-201ENSMUST00000035283 Ccdc183A2AJB1 534 aa17.36■□□□□ 0.37
Nup88-201ENSMUST00000035283 AI481877A2ALV5 1481 aa17.35■□□□□ 0.37
Nup88-201ENSMUST00000035283 Lrriq1Q0P5X1 1673 aa17.35■□□□□ 0.37
Nup88-201ENSMUST00000035283 Pola1P33609 1465 aa17.34■□□□□ 0.37
Nup88-201ENSMUST00000035283 Gm20521D3Z5F7 333 aa17.34■□□□□ 0.37
Nup88-201ENSMUST00000035283 Rlbp1Q9Z275 317 aa17.33■□□□□ 0.37
Nup88-201ENSMUST00000035283 Rnf17Q99MV7 1640 aa17.33■□□□□ 0.37
Nup88-201ENSMUST00000035283 Kiaa1107Q80TK0 1369 aa17.33■□□□□ 0.36
Nup88-201ENSMUST00000035283 Ppp1r9bQ6R891 817 aaKnown RBP17.33■□□□□ 0.36
Nup88-201ENSMUST00000035283 Armcx1Q9CX83 456 aa17.33■□□□□ 0.36
Nup88-201ENSMUST00000035283 Cdc42bpbQ7TT50 1713 aa17.32■□□□□ 0.36
Nup88-201ENSMUST00000035283 Ipo4Q8VI75 1082 aa17.32■□□□□ 0.36
Nup88-201ENSMUST00000035283 Neurl4Q5NCX5 1563 aa17.32■□□□□ 0.36
Nup88-201ENSMUST00000035283 Abcc6Q9R1S7 1498 aa17.32■□□□□ 0.36
Nup88-201ENSMUST00000035283 Prdm16A2A935 1275 aa17.32■□□□□ 0.36
Nup88-201ENSMUST00000035283 Uspl1Q3ULM6 1089 aa17.31■□□□□ 0.36
Nup88-201ENSMUST00000035283 Gm6268A2A3U9 297 aa17.3■□□□□ 0.36
Nup88-201ENSMUST00000035283 Atxn3Q9CVD2 355 aa17.3■□□□□ 0.36
Nup88-201ENSMUST00000035283 Gtf2e1Q9D0D5 440 aa17.3■□□□□ 0.36
Nup88-201ENSMUST00000035283 Pdcd11Q6NS46 1862 aaKnown RBP17.29■□□□□ 0.36
Nup88-201ENSMUST00000035283 Cfap74Q3UY96 1578 aa17.29■□□□□ 0.36
Nup88-201ENSMUST00000035283 Cnga1P29974 684 aa17.29■□□□□ 0.36
Nup88-201ENSMUST00000035283 Duxf3A0A0N4SV92 674 aa17.29■□□□□ 0.36
Nup88-201ENSMUST00000035283 Nsd2Q8BVE8 1365 aa17.29■□□□□ 0.36
Nup88-201ENSMUST00000035283 Rusc2Q80U22 1514 aa17.28■□□□□ 0.36
Nup88-201ENSMUST00000035283 Fan1Q69ZT1 1020 aa17.28■□□□□ 0.36
Nup88-201ENSMUST00000035283 Usp40Q8BWR4 1235 aa17.28■□□□□ 0.36
Nup88-201ENSMUST00000035283 Znf521Q6KAS7 1311 aa17.28■□□□□ 0.36
Nup88-201ENSMUST00000035283 Ralbp1Q62172 648 aa17.28■□□□□ 0.36
Nup88-201ENSMUST00000035283 Usp54Q8BL06 1588 aaKnown RBP17.28■□□□□ 0.36
Nup88-201ENSMUST00000035283 Tmc1Q8R4P5 757 aa17.27■□□□□ 0.35
Nup88-201ENSMUST00000035283 KarsQ99MN1 595 aaKnown RBP17.27■□□□□ 0.35
Nup88-201ENSMUST00000035283 Abcc3B2RX12 1523 aa17.27■□□□□ 0.35
Nup88-201ENSMUST00000035283 ShprhQ7TPQ3 1674 aa17.26■□□□□ 0.35
Nup88-201ENSMUST00000035283 Polr3glQ8R0C0 218 aa17.26■□□□□ 0.35
Nup88-201ENSMUST00000035283 Stk24Q99KH8 431 aa17.26■□□□□ 0.35
Nup88-201ENSMUST00000035283 Trim58Q5NCC9 485 aa17.25■□□□□ 0.35
Nup88-201ENSMUST00000035283 Hecw1Q8K4P8 1604 aa17.25■□□□□ 0.35
Nup88-201ENSMUST00000035283 Kdm5aQ3UXZ9 1690 aa17.24■□□□□ 0.35
Nup88-201ENSMUST00000035283 Itsn2Q9Z0R6 1659 aa17.24■□□□□ 0.35
Nup88-201ENSMUST00000035283 AnkarA2RT91 1465 aa17.24■□□□□ 0.35
Nup88-201ENSMUST00000035283 Trim26Q99PN3 545 aa17.23■□□□□ 0.35
Nup88-201ENSMUST00000035283 Kif1bQ60575 1816 aaKnown RBP17.23■□□□□ 0.35
Nup88-201ENSMUST00000035283 Srpk2O54781 681 aaKnown RBP17.23■□□□□ 0.35
Nup88-201ENSMUST00000035283 Uggt2E9Q4X2 1504 aa17.22■□□□□ 0.35
Nup88-201ENSMUST00000035283 Abcc1O35379 1528 aa17.22■□□□□ 0.35
Nup88-201ENSMUST00000035283 P2rx7Q9Z1M0 595 aa17.22■□□□□ 0.35
Nup88-201ENSMUST00000035283 Pnmal2G3X9N3 661 aa17.22■□□□□ 0.35
Nup88-201ENSMUST00000035283 Kcnn1Q9EQR3 537 aa17.21■□□□□ 0.35
Nup88-201ENSMUST00000035283 Spryd3E9Q9B3 442 aa17.21■□□□□ 0.34
Nup88-201ENSMUST00000035283 Kif3bQ61771 747 aa17.21■□□□□ 0.34
Nup88-201ENSMUST00000035283 Fgd6Q69ZL1 1399 aa17.2■□□□□ 0.34
Nup88-201ENSMUST00000035283 Ppp2r3aB2RXC8 1150 aa17.19■□□□□ 0.34
Nup88-201ENSMUST00000035283 Sptbn5F6UCX4 1208 aa17.19■□□□□ 0.34
Nup88-201ENSMUST00000035283 Tnpo1Q8BFY9 898 aaKnown RBP17.19■□□□□ 0.34
Nup88-201ENSMUST00000035283 Htatsf1Q8BGC0 757 aa17.19■□□□□ 0.34
Retrieved 100 of 22,080 RNA–protein pairs in 26.9 ms