RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	FGG	P02679	453 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	PLTP	P55058	493 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	PTK2	Q05397	1052 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	FSTL1	Q12841	308 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	SF3A3	Q12874	501 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	SETDB1	Q15047	1291 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	PCNX4	Q63HM2	1172 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	CYP4F22	Q6NT55	531 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	ZNF571	Q7Z3V5	609 aa	Predicted RBP	11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	VPS36	Q86VN1	386 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	SLFN12	Q8IYM2	578 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	ANKLE1	Q8NAG6	615 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	ETNPPL	Q8TBG4	499 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	FBXO25	Q8TCJ0	367 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	NSUN6	Q8TEA1	469 aa	Known RBP	11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	HPS3	Q969F9	1004 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	MMTAG2	Q9BU76	263 aa	Known RBP	11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	RAB34	Q9BZG1	259 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	TRIM31	Q9BZY9	425 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	PORCN	Q9H237	461 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	TLE6	Q9H808	572 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	ATXN10	Q9UBB4	475 aa		11.78	□□□□□ -0.52
TCF4-222	ENST00000564228	FRMPD4	Q14CM0	1322 aa		11.77	□□□□□ -0.52
TCF4-222	ENST00000564228	MAGEA13P	A6NCF6	341 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	MYMK	A6NI61	221 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	ITGB5	P18084	799 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	CHRNA3	P32297	505 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	COPB2	P35606	906 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	FXR2	P51116	673 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	POLG	P54098	1239 aa	Predicted RBP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	YARS	P54577	528 aa	Known RBP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	POLE2	P56282	527 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	CCNA1	P78396	465 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	MRPS9	P82933	396 aa	Known RBP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	MGAT5	Q09328	741 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	TAF1C	Q15572	869 aa	Predicted RBP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	GSTA3	Q16772	222 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	PABPC1L	Q4VXU2	614 aa	Known RBP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	RNF220	Q5VTB9	566 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	HHAT	Q5VTY9	493 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	CGB2	Q6NT52	195 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	VSTM1	Q6UX27	236 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	ECHDC2	Q86YB7	292 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	ZC3H3	Q8IXZ2	948 aa	Known RBP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	MYOCD	Q8IZQ8	938 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	PTPRN2	Q92932	1015 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	MXRA8	Q9BRK3	442 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	WDR11	Q9BZH6	1224 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	SEMA4A	Q9H3S1	761 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	GOLPH3	Q9H4A6	298 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	PKD2L1	Q9P0L9	805 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	TMCO1	Q9UM00	188 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	WDR81	Q562E7	1941 aa		11.77	□□□□□ -0.53
TCF4-222	ENST00000564228	SMIM23	A6NLE4	172 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	TBX3	O15119	743 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	DDX3Y	O15523	660 aa	Known RBP	11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	ZSCAN9	O15535	394 aa	Predicted RBP	11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	PHF2	O75151	1096 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	PGK2	P07205	417 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	NR3C2	P08235	984 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	AR	P10275	920 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	GM2A	P17900	193 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	CCND2	P30279	289 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	PTGIR	P43119	386 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	KCTD2	Q14681	263 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	ZNF568	Q3ZCX4	644 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	MAEA	Q7L5Y9	396 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	LCA5	Q86VQ0	697 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	IFNL1	Q8IU54	200 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	PLEKHG4B	Q96PX9	1271 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	TGS1	Q96RS0	853 aa	Known RBP	11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	ZIC5	Q96T25	663 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	MMP19	Q99542	508 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	CCDC113	Q9H0I3	377 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	MROH8	Q9H579	483 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	BLOC1S4	Q9NUP1	217 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	PCYOX1	Q9UHG3	505 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	CPA4	Q9UI42	421 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	EIF4E1B	A6NMX2	242 aa	Known RBP	11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	MEIS1	O00470	390 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	DCTN3	O75935	186 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	UPP2	O95045	317 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	GGPS1	O95749	300 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	ARID5A	Q03989	594 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	SREBF2	Q12772	1141 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	STRN3	Q13033	797 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	MTMR1	Q13613	665 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	FOXB2	Q5VYV0	432 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	LZIC	Q8WZA0	190 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	LARP4B	Q92615	738 aa	Known RBP	11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	ARHGEF2	Q92974	986 aa	Known RBP	11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	HHIPL1	Q96JK4	782 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	FAM20A	Q96MK3	541 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	ZNF577	Q9BSK1	485 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	NMRK1	Q9NWW6	199 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	LARS	Q9P2J5	1176 aa	Known RBP	11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	SNX24	Q9Y343	169 aa		11.76	□□□□□ -0.53
TCF4-222	ENST00000564228	STARD13	Q9Y3M8	1113 aa		11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms