RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 ITGA10O75578 1167 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 MT-CO1P00395 513 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 KCNA2P16389 499 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 ACO1P21399 889 aaKnown RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 PAX3P23760 479 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 MRPL12P52815 198 aaKnown RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 SLC16A1P53985 500 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 KRT72Q14CN4 511 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 ACAP1Q15027 740 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 PRKD1Q15139 912 aaPredicted RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 TBC1D25Q3MII6 688 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 NAIF1Q69YI7 327 aaPredicted RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 CCDC80Q76M96 950 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 LRRC49Q8IUZ0 686 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 FAM76AQ8TAV0 307 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 JADE3Q92613 823 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 CYFIP2Q96F07 1278 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 CDC5LQ99459 802 aaKnown RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 THUMPD2Q9BTF0 503 aaKnown RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 RWDD1Q9H446 243 aaPredicted RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.32□□□□□ -1.4
CD44-231ENST00000531110 SAP30BPQ9UHR5 308 aaKnown RBP6.32□□□□□ -1.4
CD44-231ENST00000531110 ST6GALNAC2Q9UJ37 374 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 CLCA2Q9UQC9 943 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 CTTNBP2Q8WZ74 1663 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 MYOM3Q5VTT5 1437 aa6.32□□□□□ -1.4
CD44-231ENST00000531110 EIF3AQ14152 1382 aaKnown RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 POLA1P09884 1462 aaPredicted RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 NCOA2Q15596 1464 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 KRTAP23-1A1A580 65 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 B5MCH6 92 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PCDHGA12O60330 932 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 MFAP3LO75121 409 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 SNUPNO95149 360 aaKnown RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 PECAM1P16284 738 aaPredicted RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 GCFC2P16383 781 aaKnown RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 CASRP41180 1078 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 RECQLP46063 649 aaPredicted RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 NEK2P51955 445 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 ADKP55263 362 aaKnown RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 TPM4P67936 248 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 DDR1Q08345 913 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 POSTNQ15063 836 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 ZRSR1Q15695 479 aaKnown RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 CLUL1Q15846 466 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PTPN21Q16825 1174 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 C16orf87Q6PH81 154 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PCGF5Q86SE9 256 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 MDGA1Q8NFP4 955 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 FBXO18Q8NFZ0 1043 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 OR5M3Q8NGP4 307 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.31□□□□□ -1.4
CD44-231ENST00000531110 KIF18AQ8NI77 898 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 GIMAP1Q8WWP7 306 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 TRIM6Q9C030 488 aaPredicted RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 UNC45AQ9H3U1 944 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 NRDE2Q9H7Z3 1164 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 IRAK4Q9NWZ3 460 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PCDHGA9Q9Y5G4 932 aaKnown RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 PCDHGA8Q9Y5G5 932 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PCDHGA7Q9Y5G6 932 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PCDHGA6Q9Y5G7 932 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PCDHGA3Q9Y5H0 932 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 PCDHGA2Q9Y5H1 932 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 NCOA3Q9Y6Q9 1424 aa6.31□□□□□ -1.4
CD44-231ENST00000531110 BRD4O60885 1362 aaPredicted RBP6.31□□□□□ -1.4
CD44-231ENST00000531110 ABCA5Q8WWZ7 1642 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 E2F8A0AVK6 867 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 F8VZ95 297 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 ZSCAN9O15535 394 aaPredicted RBP6.3□□□□□ -1.4
CD44-231ENST00000531110 ZBED4O75132 1171 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 NDUFS2O75306 463 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 GNAT2P19087 354 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 ACRV1P26436 265 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 FLT3LGP49771 235 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 G3BP1Q13283 466 aaKnown RBP eCLIP6.3□□□□□ -1.4
CD44-231ENST00000531110 SP140Q13342 867 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 NEDD9Q14511 834 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 ELAVL1Q15717 326 aaKnown RBP6.3□□□□□ -1.4
CD44-231ENST00000531110 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 EFCAB2Q5VUJ9 269 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 Q6ZVL8 140 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 KIAA1328Q86T90 577 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 PNMA8AQ86V59 439 aaPredicted RBP6.3□□□□□ -1.4
CD44-231ENST00000531110 ERC1Q8IUD2 1116 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 APLFQ8IW19 511 aaPredicted RBP6.3□□□□□ -1.4
CD44-231ENST00000531110 THEMISQ8N1K5 641 aaPredicted RBP6.3□□□□□ -1.4
CD44-231ENST00000531110 ZNF483Q8TF39 744 aaPredicted RBP6.3□□□□□ -1.4
CD44-231ENST00000531110 CASKIN2Q8WXE0 1202 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 ST8SIA2Q92186 375 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 JAKMIP2Q96AA8 810 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 ZBTB10Q96DT7 871 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 DTNBP1Q96EV8 351 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 TMEM176AQ96HP8 235 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 TEKT5Q96M29 485 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 CAMKK2Q96RR4 588 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 ADOQ96SZ5 270 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 MPHOSPH6Q99547 160 aaKnown RBP6.3□□□□□ -1.4
CD44-231ENST00000531110 BATF3Q9NR55 127 aa6.3□□□□□ -1.4
CD44-231ENST00000531110 NCDNQ9UBB6 729 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms