RNA–Protein interactions for RNA: ENST00000490475.1

TTC28-207, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 5

Gene TTC28, Length 724 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-207ENST00000490475 CCL16O15467 120 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 NARSO43776 548 aaKnown RBP11.29□□□□□ -0.6
TTC28-207ENST00000490475 ABLIM3O94929 683 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 YEATS4O95619 227 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 EDN1P05305 212 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 CLTAP09496 248 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 PTPN2P17706 415 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 TKTP29401 623 aaKnown RBP11.29□□□□□ -0.6
TTC28-207ENST00000490475 DDIT3P35638 169 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 STARD6P59095 220 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 CACNB1Q02641 598 aaPredicted RBP11.29□□□□□ -0.6
TTC28-207ENST00000490475 MCL1Q07820 350 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 MAPK7Q13164 816 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 VARS2Q5ST30 1063 aaKnown RBP11.29□□□□□ -0.6
TTC28-207ENST00000490475 IQCEQ6IPM2 695 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 ZNF280DQ6N043 979 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 CD302Q8IX05 232 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 TCEAL8Q8IYN2 117 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 TMEM161BQ8NDZ6 487 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 RAD54LQ92698 747 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 SUSD3Q96L08 255 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 RCOR1Q9UKL0 485 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 CFAP45Q9UL16 551 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 CA14Q9ULX7 337 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 PCDHA7Q9UN72 937 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 USP20Q9Y2K6 914 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 MRPS17Q9Y2R5 130 aaKnown RBP11.29□□□□□ -0.6
TTC28-207ENST00000490475 MRPS23Q9Y3D9 190 aaKnown RBP11.29□□□□□ -0.6
TTC28-207ENST00000490475 MORC2Q9Y6X9 1032 aaPredicted RBP11.29□□□□□ -0.6
TTC28-207ENST00000490475 MYH15Q9Y2K3 1946 aa11.29□□□□□ -0.6
TTC28-207ENST00000490475 PDCD11Q14690 1871 aaKnown RBP11.28□□□□□ -0.6
TTC28-207ENST00000490475 A0A087X0B3 334 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 PI15O43692 258 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 PPP6R2O75170 966 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 ECI2O75521 394 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 RHOP08100 348 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 MAPTP10636 758 aaKnown RBP11.28□□□□□ -0.6
TTC28-207ENST00000490475 CYP3A5P20815 502 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 MCM4P33991 863 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 MATR3P43243 847 aaKnown RBP eCLIP11.28□□□□□ -0.64e-7■□□□□ 10.2
TTC28-207ENST00000490475 OSTNP61366 133 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 ROR1Q01973 937 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 CTXN3Q4LDR2 81 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 CYP4A22Q5TCH4 519 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 RRAGBQ5VZM2 374 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 ATL3Q6DD88 541 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 CEP120Q8N960 986 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 PJA1Q8NG27 643 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 FEZF2Q8TBJ5 459 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 BICD1Q96G01 975 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 BCO2Q9BYV7 579 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 GPR88Q9GZN0 384 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 GOLGA2P5Q9HBQ8 144 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 ANKFY1Q9P2R3 1169 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 DNMT3BQ9UBC3 853 aaKnown RBP11.28□□□□□ -0.6
TTC28-207ENST00000490475 CCDC39Q9UFE4 941 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 UBQLN1Q9UMX0 589 aaKnown RBP11.28□□□□□ -0.6
TTC28-207ENST00000490475 MIA3Q5JRA6 1907 aa11.28□□□□□ -0.6
TTC28-207ENST00000490475 USP34Q70CQ2 3546 aa11.27□□□□□ -0.6
TTC28-207ENST00000490475 KANSL1LA0AUZ9 987 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 ABLIM1O14639 778 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 ADAM12O43184 909 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 TBC1D4O60343 1298 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 CUTAO60888 179 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 LRPAP1P30533 357 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 BRCC3P46736 316 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 ME1P48163 572 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 LIG4P49917 911 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 NCKAP1LP55160 1127 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 GPC5P78333 572 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 PPP2R3AQ06190 1150 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 PLD1Q13393 1074 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 MRPL58Q14197 206 aaKnown RBP11.27□□□□□ -0.61
TTC28-207ENST00000490475 MLF2Q15773 248 aaPredicted RBP11.27□□□□□ -0.61
TTC28-207ENST00000490475 SHC4Q6S5L8 630 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 PARM1Q6UWI2 310 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 CD300LGQ6UXG3 332 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 TAS1R3Q7RTX0 852 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 FRMD5Q7Z6J6 570 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 GPBP1Q86WP2 473 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 C1orf210Q8IVY1 113 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 NPAS3Q8IXF0 933 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 PDILTQ8N807 584 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 C3orf58Q8NDZ4 430 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 KCNG4Q8TDN1 519 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 DNASE1L2Q92874 299 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 FGF14Q92915 247 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 E2F7Q96AV8 911 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 ZNF512Q96ME7 567 aaPredicted RBP11.27□□□□□ -0.61
TTC28-207ENST00000490475 PARVGQ9HBI0 331 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 CYP4F11Q9HBI6 524 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 AFF4Q9UHB7 1163 aaKnown RBP11.27□□□□□ -0.61
TTC28-207ENST00000490475 PCDHB8Q9UN66 801 aa11.27□□□□□ -0.61
TTC28-207ENST00000490475 SPTBN4Q9H254 2564 aa11.26□□□□□ -0.61
TTC28-207ENST00000490475 GVINP1Q7Z2Y8 2422 aa11.26□□□□□ -0.61
TTC28-207ENST00000490475 WDR27A2RRH5 827 aa11.26□□□□□ -0.61
TTC28-207ENST00000490475 OR6C75A6NL08 312 aa11.26□□□□□ -0.61
TTC28-207ENST00000490475 HNRNPDLO14979 420 aaKnown RBP11.26□□□□□ -0.61
TTC28-207ENST00000490475 FAM13AO94988 1023 aa11.26□□□□□ -0.61
TTC28-207ENST00000490475 LMNAP02545 664 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms