RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 NOP14P78316 857 aaKnown RBP16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 NAB2Q15742 525 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 WDR72Q3MJ13 1102 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 XKR4Q5GH76 650 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 EHBP1Q8NDI1 1231 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 C3orf58Q8NDZ4 430 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 CASD1Q96PB1 797 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 IMPG2Q9BZV3 1241 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 SIX2Q9NPC8 291 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 UBE2TQ9NPD8 197 aaPredicted RBP16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 UBN1Q9NPG3 1134 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 POLIQ9UNA4 740 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 NR2E3Q9Y5X4 410 aa16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 PDCD11Q14690 1871 aaKnown RBP16.58■□□□□ 0.24
PDLIM5-202ENST00000318007 I3L4J1 428 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 NOL4O94818 638 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 RAP1GAPP47736 663 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 OR1G1P47890 313 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 FXR1P51114 621 aaKnown RBP eCLIP16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 WDR44Q5JSH3 913 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 C9orf57Q5W0N0 161 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 PSRC1Q6PGN9 363 aaPredicted RBP16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 CACNA2D4Q7Z3S7 1137 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 CRIPAKQ8N1N5 446 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 TOP1MTQ969P6 601 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 FAM193BQ96PV7 902 aaPredicted RBP16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 ZBED2Q9BTP6 218 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 NUB1Q9Y5A7 615 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 CHD9Q3L8U1 2897 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 ITGB1P05556 798 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 CD58P19256 250 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 ARID5AQ03989 594 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 GRIK3Q13003 919 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 SPOUT1Q5T280 376 aaKnown RBP16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 CXorf38Q8TB03 319 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 HPDLQ96IR7 371 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 MMS19Q96T76 1030 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 YME1L1Q96TA2 773 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 ELAC1Q9H777 363 aaKnown RBP16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 APEX2Q9UBZ4 518 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 ITGA11Q9UKX5 1188 aa16.57■□□□□ 0.24
PDLIM5-202ENST00000318007 PTPRSQ13332 1948 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 SCN1AP35498 2009 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 A0A1W2PQC6 194 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 PODXLO00592 558 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 B3GAT3O94766 335 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 CSPG5O95196 566 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 PTMAP06454 111 aaKnown RBP16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 UCHL3P15374 230 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 AP3M2P53677 418 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 BCAR1P56945 870 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 KLHDC7AQ5VTJ3 777 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 IQCEQ6IPM2 695 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 PPFIBP1Q86W92 1011 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 CCDC150Q8NCX0 1101 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 NT5C1BQ96P26 610 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 SLC38A7Q9NVC3 462 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 DERAQ9Y315 318 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 SNX9Q9Y5X1 595 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 EYSQ5T1H1 3165 aa16.56■□□□□ 0.24
PDLIM5-202ENST00000318007 GTPBP10A4D1E9 387 aaKnown RBP16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 GRXCR1A8MXD5 290 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 H0YGN5 161 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 SPTLC1O15269 473 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 XPOTO43592 962 aaKnown RBP16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 DGKIO75912 1065 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 BAIAP3O94812 1187 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 WEE2P0C1S8 567 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 USP8P40818 1118 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 RABGGTBP53611 331 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 CDH8P55286 799 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 RBP5P82980 135 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 ORC1Q13415 861 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 FAM109BQ6ICB4 259 aaPredicted RBP16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 XYLT2Q9H1B5 865 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 GANQ9H2C0 597 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 DNAJC12Q9UKB3 198 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 COQ4Q9Y3A0 265 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 SLC4A7Q9Y6M7 1214 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 P4HA2O15460 535 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 KIF4AO95239 1232 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 CALCAP01258 141 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 POU5F1Q01860 360 aaKnown RBP16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 TUSC3Q13454 348 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 ZNF394Q53GI3 561 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 DPY19L2P1Q6NXN4 242 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 CCDC186Q7Z3E2 898 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 NT5DC4Q86YG4 428 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 SMYD3Q9H7B4 428 aa16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 TIMM13Q9Y5L4 95 aaPredicted RBP16.55■□□□□ 0.24
PDLIM5-202ENST00000318007 ASS1P00966 412 aaKnown RBP16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 ATP2A2P16615 1042 aaKnown RBP16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 BRCC3P46736 316 aa16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 BTG3Q14201 252 aaPredicted RBP16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 SHHQ15465 462 aa16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 UPP1Q16831 310 aa16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 SGSM1Q2NKQ1 1148 aa16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 TMEM173Q86WV6 379 aaPredicted RBP16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 RNPC3Q96LT9 517 aaKnown RBP16.54■□□□□ 0.24
PDLIM5-202ENST00000318007 SPAG5Q96R06 1193 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms