RNA–Protein interactions for RNA: YJR044C

VPS55, Transcript of Late endosomal protein involved in late endosome to vacuole transport, yeast

Gene VPS55, Length 423 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS55	YJR044C	TVP15	Q03860	143 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	PLP1	Q04004	230 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	PEX12	Q04370	399 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	SMD2	Q06217	110 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	NOC4	Q06512	552 aa	Predicted RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	SUE1	Q06524	206 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YNG1	Q08465	219 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	PEX11	Q12462	236 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	YAL063C-A	Q3E791	96 aa		1.11	□□□□□ -2.23
VPS55	YJR044C	RPS28A	Q3E7X9	67 aa	Predicted RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	FKS1	P38631	1876 aa	Known RBP	1.11	□□□□□ -2.23
VPS55	YJR044C	AUS1	Q08409	1394 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YOL163W	P0CF20	169 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	RPS24A	P0CX31	135 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	RPS24B	P0CX32	135 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	RPL35A	P0CX84	120 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	RPL35B	P0CX85	120 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	CPT1	P17898	393 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	ATG22	P25568	528 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	ERG24	P32462	438 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	VMA11	P32842	164 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	MRPL27	P36526	146 aa	Predicted RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	MRPS9	P38120	278 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	FIG1	P38224	298 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	AIM2	P39721	246 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	HMF1	P40037	129 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	YER189W	P40104	122 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	PEX17	P40155	199 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	RRG9	P40156	214 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	FIS1	P40515	155 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	ERG10	P41338	398 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	YFH7	P43591	353 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	FAR7	P43592	221 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	OST3	P48439	350 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	SBH2	P52871	88 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	MIG2	P53035	382 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YGL235W	P53071	178 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YGR067C	P53243	804 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	ERV29	P53337	310 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YIP3	P53633	176 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YNL247W	P53852	767 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	NRK1	P53915	240 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YNL046W	P53956	172 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YPL039W	Q03080	316 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YMR279C	Q03263	540 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	ECM11	Q04110	302 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	EMI1	Q04406	187 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	GRX8	Q05926	109 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	ECM19	Q06011	112 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	GGA1	Q06336	557 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YLR030W	Q07967	263 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YOL024W	Q08172	172 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YDL085C-A	Q3E7B7	68 aa	Known RBP	1.1	□□□□□ -2.23
VPS55	YJR044C	YCL012C	Q8J0M4	134 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YHR214C-E	Q8TGK0	99 aa		1.1	□□□□□ -2.23
VPS55	YJR044C	YLR462W	O13556	202 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	SIR2	P06700	562 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	CBP6	P07253	162 aa	Predicted RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	MRS1	P07266	363 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	SNF4	P12904	322 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	CUP2	P15315	225 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	ERD2	P18414	219 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	CKS1	P20486	150 aa	Known RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	SCO1	P23833	295 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	RCN1	P36054	211 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	SRP102	P36057	244 aa	Predicted RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	MSA2	P36157	363 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	TRM7	P38238	310 aa	Known RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	FES1	P38260	290 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	COS8	P38723	381 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	YEL075C	P39972	122 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	GLE2	P40066	365 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	COG3	P40094	801 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	YIR035C	P40579	254 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	BUD13	P46947	266 aa	Predicted RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	FLC3	P53121	802 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	JAC1	P53193	184 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	LSM7	P53905	115 aa	Known RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	YLR460C	P54007	376 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	OSH6	Q02201	448 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	GAS3	Q03655	524 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	YDR114C	Q04597	100 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	ATG39	Q06159	398 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	LOA1	Q06508	300 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	YLR031W	Q07978	186 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	YOL160W	Q08321	113 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	MSA1	Q08471	629 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	IES4	Q08561	116 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	TIR4	Q12218	487 aa	Predicted RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	SMT3	Q12306	101 aa	Known RBP	1.09	□□□□□ -2.23
VPS55	YJR044C	ATG5	Q12380	294 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	YPR014C	Q6B0W2	109 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	TDA8	Q6B2U8	126 aa		1.09	□□□□□ -2.23
VPS55	YJR044C	CMD1	P06787	147 aa	Known RBP	1.08	□□□□□ -2.24
VPS55	YJR044C	COS2	P0CX12	379 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	COS3	P0CX13	379 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	COX10	P21592	462 aa		1.08	□□□□□ -2.24
VPS55	YJR044C	MAG1	P22134	296 aa	Known RBP	1.08	□□□□□ -2.24
VPS55	YJR044C	PRE7	P23724	241 aa	Known RBP	1.08	□□□□□ -2.24
VPS55	YJR044C	MGT1	P26188	188 aa		1.08	□□□□□ -2.24

Retrieved 100 of 5,963 RNA–protein pairs in 25.2 ms