RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeastyeast

Gene PRE9, Length 777 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRE9YGR135W YHR127WP38833 243 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W LSM4P40070 187 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W VMA21P41806 77 aa3.78□□□□□ -1.8
PRE9YGR135W DAN1P47178 298 aa3.78□□□□□ -1.8
PRE9YGR135W SOL1P50278 321 aa3.78□□□□□ -1.8
PRE9YGR135W PNG1Q02890 363 aa3.78□□□□□ -1.8
PRE9YGR135W EST3Q03096 181 aa3.78□□□□□ -1.8
PRE9YGR135W CTL1Q03220 320 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W NUP53Q03790 475 aa3.78□□□□□ -1.8
PRE9YGR135W NMA1Q06178 401 aaKnown RBP3.78□□□□□ -1.8
PRE9YGR135W NOC4Q06512 552 aaPredicted RBP3.78□□□□□ -1.8
PRE9YGR135W MMT2Q08970 484 aa3.78□□□□□ -1.8
PRE9YGR135W RAD28Q12021 506 aa3.78□□□□□ -1.8
PRE9YGR135W TPO4Q12256 659 aa3.78□□□□□ -1.8
PRE9YGR135W TFC7Q12415 435 aa3.78□□□□□ -1.8
PRE9YGR135W YNL162W-AQ3E7A8 72 aa3.78□□□□□ -1.8
PRE9YGR135W YPT1P01123 206 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W UBI4P0CG63 381 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W RPL40AP0CH08 128 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W RPL40BP0CH09 128 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W RPL18AP0CX49 186 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W RPL18BP0CX50 186 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W RPL12AP0CX53 165 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W RPL12BP0CX54 165 aa3.77□□□□□ -1.81
PRE9YGR135W YPK2P18961 677 aa3.77□□□□□ -1.81
PRE9YGR135W MEK1P24719 497 aaPredicted RBP3.77□□□□□ -1.81
PRE9YGR135W PUT3P25502 979 aaPredicted RBP3.77□□□□□ -1.81
PRE9YGR135W ADE1P27616 306 aa3.77□□□□□ -1.81
PRE9YGR135W TIP1P27654 210 aaPredicted RBP3.77□□□□□ -1.81
PRE9YGR135W YEF1P32622 495 aa3.77□□□□□ -1.81
PRE9YGR135W MSN4P33749 630 aa3.77□□□□□ -1.81
PRE9YGR135W SSS1P35179 80 aa3.77□□□□□ -1.81
PRE9YGR135W YPC1P38298 316 aa3.77□□□□□ -1.81
PRE9YGR135W YMR262WP38430 313 aa3.77□□□□□ -1.81
PRE9YGR135W GGC1P38988 300 aa3.77□□□□□ -1.81
PRE9YGR135W YAL037WP39728 267 aa3.77□□□□□ -1.81
PRE9YGR135W ICE2P40499 491 aa3.77□□□□□ -1.81
PRE9YGR135W EMC5P40540 141 aa3.77□□□□□ -1.81
PRE9YGR135W RTS2P40962 232 aa3.77□□□□□ -1.81
PRE9YGR135W AZF1P41696 914 aa3.77□□□□□ -1.81
PRE9YGR135W IDP2P41939 412 aa3.77□□□□□ -1.81
PRE9YGR135W COG7P53195 279 aa3.77□□□□□ -1.81
PRE9YGR135W OKP1P53298 406 aa3.77□□□□□ -1.81
PRE9YGR135W AAH1P53909 347 aa3.77□□□□□ -1.81
PRE9YGR135W RTN1Q04947 295 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W SNT309Q06091 175 aaPredicted RBP3.77□□□□□ -1.81
PRE9YGR135W BER1Q06688 274 aaKnown RBP3.77□□□□□ -1.81
PRE9YGR135W YDR262WQ12331 272 aa3.77□□□□□ -1.81
PRE9YGR135W AHC1Q12433 566 aa3.77□□□□□ -1.81
PRE9YGR135W PRM4Q12498 284 aa3.77□□□□□ -1.81
PRE9YGR135W YLR111WQ12528 110 aa3.77□□□□□ -1.81
PRE9YGR135W CDC7P06243 507 aa3.76□□□□□ -1.81
PRE9YGR135W ARF1P11076 181 aaKnown RBP3.76□□□□□ -1.81
PRE9YGR135W MRPL44P19956 98 aa3.76□□□□□ -1.81
PRE9YGR135W EPT1P22140 391 aa3.76□□□□□ -1.81
PRE9YGR135W PTR2P32901 601 aa3.76□□□□□ -1.81
PRE9YGR135W SGE1P33335 543 aa3.76□□□□□ -1.81
PRE9YGR135W YNK1P36010 153 aaKnown RBP3.76□□□□□ -1.81
PRE9YGR135W COS9P36034 407 aa3.76□□□□□ -1.81
PRE9YGR135W SRP102P36057 244 aaPredicted RBP3.76□□□□□ -1.81
PRE9YGR135W PHD1P36093 366 aa3.76□□□□□ -1.81
PRE9YGR135W YCR041WP37265 110 aa3.76□□□□□ -1.81
PRE9YGR135W YBR013CP38215 129 aa3.76□□□□□ -1.81
PRE9YGR135W YPT35P38815 214 aaKnown RBP3.76□□□□□ -1.81
PRE9YGR135W LYS1P38998 373 aaRIP-Chip data3.76□□□□□ -1.81not detected
PRE9YGR135W OTU1P43558 301 aa3.76□□□□□ -1.81
PRE9YGR135W YJR141WP47172 347 aaPredicted RBP3.76□□□□□ -1.81
PRE9YGR135W TOS2P50078 622 aa3.76□□□□□ -1.81
PRE9YGR135W YGL101WP53144 215 aa3.76□□□□□ -1.81
PRE9YGR135W TIM21P53220 239 aa3.76□□□□□ -1.81
PRE9YGR135W YGR042WP53227 271 aa3.76□□□□□ -1.81
PRE9YGR135W RSM27P53305 110 aa3.76□□□□□ -1.81
PRE9YGR135W ATP23P53722 227 aa3.76□□□□□ -1.81
PRE9YGR135W GPI15P53961 229 aa3.76□□□□□ -1.81
PRE9YGR135W CCE1Q03702 353 aa3.76□□□□□ -1.81
PRE9YGR135W YMR253CQ04835 414 aa3.76□□□□□ -1.81
PRE9YGR135W LDS2Q08218 356 aa3.76□□□□□ -1.81
PRE9YGR135W GEP3Q08622 556 aa3.76□□□□□ -1.81
PRE9YGR135W TDH2P00358 332 aaKnown RBP3.75□□□□□ -1.81
PRE9YGR135W RPL25P04456 142 aaKnown RBP3.75□□□□□ -1.81
PRE9YGR135W PTP1P25044 335 aa3.75□□□□□ -1.81
PRE9YGR135W YCR007CP25354 239 aa3.75□□□□□ -1.81
PRE9YGR135W POF1P25576 258 aa3.75□□□□□ -1.81
PRE9YGR135W CDC50P25656 391 aa3.75□□□□□ -1.81
PRE9YGR135W COQ3P27680 312 aa3.75□□□□□ -1.81
PRE9YGR135W NTF2P33331 125 aaKnown RBP3.75□□□□□ -1.81
PRE9YGR135W MRPL27P36526 146 aaPredicted RBP3.75□□□□□ -1.81
PRE9YGR135W IML3P38265 245 aa3.75□□□□□ -1.81
PRE9YGR135W PEX32P38292 413 aa3.75□□□□□ -1.81
PRE9YGR135W APQ12P40532 138 aa3.75□□□□□ -1.81
PRE9YGR135W YIP1P53039 248 aa3.75□□□□□ -1.81
PRE9YGR135W CDH1P53197 566 aa3.75□□□□□ -1.81
PRE9YGR135W SWC4P53201 476 aa3.75□□□□□ -1.81
PRE9YGR135W YNR062CP53748 327 aa3.75□□□□□ -1.81
PRE9YGR135W APJ1P53940 528 aa3.75□□□□□ -1.81
PRE9YGR135W MRPS17Q03246 237 aaPredicted RBP3.75□□□□□ -1.81
PRE9YGR135W BET5Q03630 159 aa3.75□□□□□ -1.81
PRE9YGR135W FIT1Q04433 528 aa3.75□□□□□ -1.81
PRE9YGR135W SEN15Q04675 128 aa3.75□□□□□ -1.81
PRE9YGR135W YLR112WQ12130 139 aa3.75□□□□□ -1.81
Retrieved 100 of 5,963 RNA–protein pairs in 40.1 ms