RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YDR248CQ03786 193 aa2.26□□□□□ -2.05
UPF3YGR072W PEX12Q04370 399 aa2.26□□□□□ -2.05
UPF3YGR072W MSA1Q08471 629 aa2.26□□□□□ -2.05
UPF3YGR072W KRE1P17260 313 aa2.25□□□□□ -2.05
UPF3YGR072W YPK2P18961 677 aa2.25□□□□□ -2.05
UPF3YGR072W DBF2P22204 572 aa2.25□□□□□ -2.05
UPF3YGR072W MIG1P27705 504 aa2.25□□□□□ -2.05
UPF3YGR072W TAF14P35189 244 aa2.25□□□□□ -2.05
UPF3YGR072W YBR063CP38083 404 aa2.25□□□□□ -2.05
UPF3YGR072W TRM5P38793 499 aa2.25□□□□□ -2.05
UPF3YGR072W RPF1P38805 295 aaKnown RBP2.25□□□□□ -2.05
UPF3YGR072W SPO73P40031 143 aa2.25□□□□□ -2.05
UPF3YGR072W YER188WP40103 239 aa2.25□□□□□ -2.05
UPF3YGR072W RSM25P40496 264 aa2.25□□□□□ -2.05
UPF3YGR072W YRB2P40517 327 aa2.25□□□□□ -2.05
UPF3YGR072W YJL144WP47009 104 aa2.25□□□□□ -2.05
UPF3YGR072W YJL016WP47072 561 aa2.25□□□□□ -2.05
UPF3YGR072W YJR056CP47115 236 aa2.25□□□□□ -2.05
UPF3YGR072W PRM8P53174 237 aa2.25□□□□□ -2.05
UPF3YGR072W YGR026WP53217 278 aa2.25□□□□□ -2.05
UPF3YGR072W PDR17P53844 350 aa2.25□□□□□ -2.05
UPF3YGR072W GRH1Q04410 372 aaKnown RBP2.25□□□□□ -2.05
UPF3YGR072W YOR268CQ08734 132 aa2.25□□□□□ -2.05
UPF3YGR072W DPM1P14020 267 aaKnown RBP2.24□□□□□ -2.05
UPF3YGR072W CCA1P21269 546 aa2.24□□□□□ -2.05
UPF3YGR072W RFA3P26755 122 aaKnown RBP2.24□□□□□ -2.05
UPF3YGR072W APS1P35181 156 aa2.24□□□□□ -2.05
UPF3YGR072W SRY1P36007 326 aa2.24□□□□□ -2.05
UPF3YGR072W DOG2P38773 246 aa2.24□□□□□ -2.05
UPF3YGR072W DOG1P38774 246 aa2.24□□□□□ -2.05
UPF3YGR072W YHR125WP38831 101 aa2.24□□□□□ -2.05
UPF3YGR072W YER084WP40057 128 aa2.24□□□□□ -2.05
UPF3YGR072W COG3P40094 801 aa2.24□□□□□ -2.05
UPF3YGR072W PIR5P46999 287 aa2.24□□□□□ -2.05
UPF3YGR072W RSM10Q03201 203 aa2.24□□□□□ -2.05
UPF3YGR072W ATG39Q06159 398 aa2.24□□□□□ -2.05
UPF3YGR072W NIP7Q08962 181 aaKnown RBP2.24□□□□□ -2.05
UPF3YGR072W YPL229WQ99395 206 aa2.24□□□□□ -2.05
UPF3YGR072W Q0255P03881 472 aa2.23□□□□□ -2.05
UPF3YGR072W VMA11P32842 164 aa2.23□□□□□ -2.05
UPF3YGR072W YCR087C-AP37263 153 aa2.23□□□□□ -2.05
UPF3YGR072W BMT5P40493 336 aa2.23□□□□□ -2.05
UPF3YGR072W IGO1P53897 168 aa2.23□□□□□ -2.05
UPF3YGR072W TLG1Q03322 224 aa2.23□□□□□ -2.05
UPF3YGR072W MDM32Q12171 622 aa2.23□□□□□ -2.05
UPF3YGR072W TUS1Q06412 1307 aa2.22□□□□□ -2.05
UPF3YGR072W OAC1P32332 324 aa2.22□□□□□ -2.05
UPF3YGR072W YHL026CP38740 315 aa2.22□□□□□ -2.05
UPF3YGR072W RMD6P39975 231 aa2.22□□□□□ -2.05
UPF3YGR072W RAD9P14737 1309 aa2.21□□□□□ -2.06
UPF3YGR072W RPL26AP05743 127 aaKnown RBP2.21□□□□□ -2.06
UPF3YGR072W MER1P16523 270 aa2.21□□□□□ -2.06
UPF3YGR072W ATG22P25568 528 aa2.21□□□□□ -2.06
UPF3YGR072W SCM4P32564 187 aa2.21□□□□□ -2.06
UPF3YGR072W SKG1P36169 355 aa2.21□□□□□ -2.06
UPF3YGR072W SDH4P37298 181 aa2.21□□□□□ -2.06
UPF3YGR072W ECM33P38248 429 aaKnown RBP2.21□□□□□ -2.06
UPF3YGR072W GRE3P38715 327 aaKnown RBP RIP-Chip data2.21□□□□□ -2.06not detected
UPF3YGR072W RPA43P46669 326 aa2.21□□□□□ -2.06
UPF3YGR072W HOP2P53187 214 aa2.21□□□□□ -2.06
UPF3YGR072W RPL26BP53221 127 aaKnown RBP2.21□□□□□ -2.06
UPF3YGR072W NOP19P53317 196 aaPredicted RBP2.21□□□□□ -2.06
UPF3YGR072W SSU72P53538 206 aaPredicted RBP2.21□□□□□ -2.06
UPF3YGR072W CLP1Q08685 445 aaPredicted RBP2.21□□□□□ -2.06
UPF3YGR072W QCR7P00128 127 aa2.2□□□□□ -2.06
UPF3YGR072W RPL25P04456 142 aaKnown RBP2.2□□□□□ -2.06
UPF3YGR072W RPL9AP05738 191 aaKnown RBP2.2□□□□□ -2.06
UPF3YGR072W YPR170W-BP0C5R9 85 aa2.2□□□□□ -2.06
UPF3YGR072W SPS18P32572 300 aa2.2□□□□□ -2.06
UPF3YGR072W MRPL28P36527 147 aa2.2□□□□□ -2.06
UPF3YGR072W RPL9BP51401 191 aaKnown RBP2.2□□□□□ -2.06
UPF3YGR072W YNL010WP53981 241 aaKnown RBP2.2□□□□□ -2.06
UPF3YGR072W LPP1Q04396 274 aa2.2□□□□□ -2.06
UPF3YGR072W SUE1Q06524 206 aa2.2□□□□□ -2.06
UPF3YGR072W AKR2Q12013 749 aa2.2□□□□□ -2.06
UPF3YGR072W MHT1Q12525 324 aa2.2□□□□□ -2.06
UPF3YGR072W CHD1P32657 1468 aa2.2□□□□□ -2.06
UPF3YGR072W YHR032W-AP0C5N6 59 aa2.19□□□□□ -2.06
UPF3YGR072W AST2P39945 430 aaKnown RBP2.19□□□□□ -2.06
UPF3YGR072W IRC22P40006 225 aa2.19□□□□□ -2.06
UPF3YGR072W YIL001WP40560 513 aa2.19□□□□□ -2.06
UPF3YGR072W MRPL49P40858 161 aaPredicted RBP2.19□□□□□ -2.06
UPF3YGR072W MMS2P53152 137 aa2.19□□□□□ -2.06
UPF3YGR072W SNZ1Q03148 297 aa2.19□□□□□ -2.06
UPF3YGR072W PRM15Q03262 622 aa2.19□□□□□ -2.06
UPF3YGR072W RDS3Q06835 107 aaPredicted RBP2.19□□□□□ -2.06
UPF3YGR072W YHR139C-AO13536 103 aa2.18□□□□□ -2.06
UPF3YGR072W CDC8P00572 216 aa2.18□□□□□ -2.06
UPF3YGR072W PUT1P09368 476 aa2.18□□□□□ -2.06
UPF3YGR072W ATP7P30902 174 aa2.18□□□□□ -2.06
UPF3YGR072W CLB6P32943 380 aa2.18□□□□□ -2.06
UPF3YGR072W POP4P38336 279 aa2.18□□□□□ -2.06
UPF3YGR072W SNX4P47057 423 aa2.18□□□□□ -2.06
UPF3YGR072W DSK2P48510 373 aa2.18□□□□□ -2.06
UPF3YGR072W LSM7P53905 115 aaKnown RBP2.18□□□□□ -2.06
UPF3YGR072W GPM2Q12008 311 aa2.18□□□□□ -2.06
UPF3YGR072W TDA8Q6B2U8 126 aa2.18□□□□□ -2.06
UPF3YGR072W YCL012CQ8J0M4 134 aa2.18□□□□□ -2.06
UPF3YGR072W MSW1P04803 379 aa2.17□□□□□ -2.06
UPF3YGR072W SEC4P07560 215 aaKnown RBP2.17□□□□□ -2.06
Retrieved 100 of 5,963 RNA–protein pairs in 22.7 ms