RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 MOGSQ13724 837 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 TNFAIP1Q13829 316 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 SF3B3Q15393 1217 aaKnown RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 SLC10A6Q3KNW5 377 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 TRIM60Q495X7 471 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 MAP3K21Q5TCX8 1036 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 KCTD1Q719H9 257 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 ASCL5Q7RTU5 278 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 DGLUCYQ7Z3D6 616 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 MICAL1Q8TDZ2 1067 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 DCAF4Q8WV16 495 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 ATOH1Q92858 354 aaPredicted RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 PLA2G12BQ9BX93 195 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 TANGO6Q9C0B7 1094 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 C12orf65Q9H3J6 166 aaKnown RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 CCSER2Q9H7U1 834 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 SLC28A3Q9HAS3 691 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 MSL2Q9HCI7 577 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 PRKAG3Q9UGI9 489 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 TMA7Q9Y2S6 64 aaKnown RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 MAP1BP46821 2468 aaKnown RBP5.53□□□□□ -1.52
LINC00540-201ENST00000611481 ATRNL1Q5VV63 1379 aa5.53□□□□□ -1.52
LINC00540-201ENST00000611481 XDHP47989 1333 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 A0A0G2JMZ2 1700 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 REV3LO60673 3130 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 A0A1W2PQU0 124 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 TCP10L2B9ZVM9 353 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 ACOT7O00154 380 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 U2SURPO15042 1029 aaKnown RBP5.52□□□□□ -1.53
LINC00540-201ENST00000611481 PPFIA2O75334 1257 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 SSBP05455 408 aaKnown RBP eCLIP5.52□□□□□ -1.53
LINC00540-201ENST00000611481 ADH4P08319 380 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 CYP2B6P20813 491 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 ETV4P43268 484 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 RBM5P52756 815 aaKnown RBP eCLIP5.52□□□□□ -1.53
LINC00540-201ENST00000611481 RRADP55042 308 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 FPGSQ05932 587 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 DUSP8Q13202 625 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 TUBA3CQ13748 450 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 RAB30Q15771 203 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 TUBA3EQ6PEY2 450 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 DHX37Q8IY37 1157 aaKnown RBP5.52□□□□□ -1.53
LINC00540-201ENST00000611481 ANKRD13CQ8N6S4 541 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 SLC43A3Q8NBI5 491 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 SMCR8Q8TEV9 937 aaPredicted RBP5.52□□□□□ -1.53
LINC00540-201ENST00000611481 SIN3AQ96ST3 1273 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 ZFYVE21Q9BQ24 234 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 TMEM39BQ9GZU3 492 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 SLC39A2Q9NP94 309 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 AURKAIP1Q9NWT8 199 aaPredicted RBP5.52□□□□□ -1.53
LINC00540-201ENST00000611481 MSRAQ9UJ68 235 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 COL4A6Q14031 1691 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 FAM208BQ5VWN6 2430 aa5.52□□□□□ -1.53
LINC00540-201ENST00000611481 DNAH12Q6ZR08 3092 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 TLDC2A0PJX2 215 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 DBPQ10586 325 aaPredicted RBP5.51□□□□□ -1.53
LINC00540-201ENST00000611481 NFYCQ13952 458 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 NOLC1Q14978 699 aaKnown RBP eCLIP5.51□□□□□ -1.53
LINC00540-201ENST00000611481 KRT40Q6A162 431 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 SLC39A5Q6ZMH5 540 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 CERS3Q8IU89 383 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 ZNF808Q8N4W9 903 aaPredicted RBP5.51□□□□□ -1.53
LINC00540-201ENST00000611481 PRRX2Q99811 253 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 THUMPD2Q9BTF0 503 aaKnown RBP5.51□□□□□ -1.53
LINC00540-201ENST00000611481 COA1Q9GZY4 146 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 ZNF70Q9UC06 446 aaPredicted RBP5.51□□□□□ -1.53
LINC00540-201ENST00000611481 GJD2Q9UKL4 321 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 MTCH2Q9Y6C9 303 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 MED23Q9ULK4 1368 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 BRWD1Q9NSI6 2320 aa5.51□□□□□ -1.53
LINC00540-201ENST00000611481 GVINP1Q7Z2Y8 2422 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 AK9Q5TCS8 1911 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 PRR23AA6NEV1 266 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 FAM47E-STBD1D6RA91 191 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 MATN2O00339 956 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 ARHGAP6O43182 974 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 GJB6O95452 261 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 ATP2B1P20020 1258 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 MAKP20794 623 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 DNAJA1P31689 397 aaKnown RBP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 HIBADHP31937 336 aaKnown RBP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 GPR85P60893 370 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 WDR72Q3MJ13 1102 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 HSP90AB3PQ58FF7 597 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 GADL1Q6ZQY3 521 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 ZNF662Q6ZS27 426 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 NOL8Q76FK4 1167 aaKnown RBP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 VPS37DQ86XT2 251 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 LDLRAD3Q86YD5 345 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 CERS5Q8N5B7 392 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 ZNF483Q8TF39 744 aaPredicted RBP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 ZG16BQ96DA0 208 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 ZDHHC5Q9C0B5 715 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 TDRD3Q9H7E2 651 aaKnown RBP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 CAPN10Q9HC96 672 aa5.5□□□□□ -1.53
LINC00540-201ENST00000611481 PUF60Q9UHX1 559 aaKnown RBP5.5□□□□□ -1.53
LINC00540-201ENST00000611481 PLXNA3P51805 1871 aa5.49□□□□□ -1.53
LINC00540-201ENST00000611481 CHD9Q3L8U1 2897 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms