RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 AEBP2Q6ZN18 517 aaPredicted RBP26.82■■□□□ 1.88
LINC00540-201ENST00000611481 CHIC1Q5VXU3 224 aa25.45■■□□□ 1.66
LINC00540-201ENST00000611481 SENP3Q9H4L4 574 aaPredicted RBP22.96■■□□□ 1.27
LINC00540-201ENST00000611481 PHF23Q9BUL5 403 aaPredicted RBP22.63■■□□□ 1.21
LINC00540-201ENST00000611481 FOXD1Q16676 465 aa21.36■■□□□ 1.01
LINC00540-201ENST00000611481 PLPPR3Q6T4P5 718 aa20.34■□□□□ 0.85
LINC00540-201ENST00000611481 MSH5O43196 834 aa20.06■□□□□ 0.8
LINC00540-201ENST00000611481 PIAS4Q8N2W9 510 aaPredicted RBP19.96■□□□□ 0.79
LINC00540-201ENST00000611481 PPP6R1Q9UPN7 881 aa19.91■□□□□ 0.78
LINC00540-201ENST00000611481 ADRA2BP18089 450 aa19.86■□□□□ 0.77
LINC00540-201ENST00000611481 POTEDQ86YR6 584 aa19.64■□□□□ 0.73
LINC00540-201ENST00000611481 MAPK8IP2Q13387 824 aaPredicted RBP18.25■□□□□ 0.51
LINC00540-201ENST00000611481 SCAF1Q9H7N4 1312 aaKnown RBP18.24■□□□□ 0.51
LINC00540-201ENST00000611481 DMRT2Q9Y5R5 561 aa18.18■□□□□ 0.5
LINC00540-201ENST00000611481 PPP4R3CPQ6ZMV5 832 aa17.8■□□□□ 0.44
LINC00540-201ENST00000611481 CNKSR2Q8WXI2 1034 aa17.5■□□□□ 0.39
LINC00540-201ENST00000611481 HOXD11P31277 338 aaPredicted RBP17.48■□□□□ 0.39
LINC00540-201ENST00000611481 DCAF8L1A6NGE4 600 aa17.45■□□□□ 0.38
LINC00540-201ENST00000611481 RNF216Q9NWF9 866 aaPredicted RBP17.35■□□□□ 0.37
LINC00540-201ENST00000611481 CACNB1Q02641 598 aaPredicted RBP17.25■□□□□ 0.35
LINC00540-201ENST00000611481 NCBP3Q53F19 620 aaKnown RBP17.14■□□□□ 0.33
LINC00540-201ENST00000611481 RNF39Q9H2S5 420 aa17.09■□□□□ 0.33
LINC00540-201ENST00000611481 DNAJC5BQ9UF47 199 aa16.92■□□□□ 0.3
LINC00540-201ENST00000611481 C1QBPQ07021 282 aaKnown RBP16.86■□□□□ 0.29
LINC00540-201ENST00000611481 NPM3O75607 178 aaKnown RBP16.84■□□□□ 0.29
LINC00540-201ENST00000611481 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.69■□□□□ 0.26
LINC00540-201ENST00000611481 KCNA4P22459 653 aa16.46■□□□□ 0.23
LINC00540-201ENST00000611481 U3KPZ7 1027 aaPredicted RBP16.29■□□□□ 0.2
LINC00540-201ENST00000611481 SLC4A2P04920 1241 aa16.09■□□□□ 0.17
LINC00540-201ENST00000611481 CAPN15O75808 1086 aa16.07■□□□□ 0.16
LINC00540-201ENST00000611481 SPINK5Q9NQ38 1064 aaPredicted RBP16.06■□□□□ 0.16
LINC00540-201ENST00000611481 DSG3P32926 999 aa15.97■□□□□ 0.15
LINC00540-201ENST00000611481 APLP2Q06481 763 aa15.91■□□□□ 0.14
LINC00540-201ENST00000611481 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.87■□□□□ 0.13
LINC00540-201ENST00000611481 HNRNPUL2Q1KMD3 747 aaKnown RBP15.87■□□□□ 0.13
LINC00540-201ENST00000611481 TRHP20396 242 aaPredicted RBP15.8■□□□□ 0.12
LINC00540-201ENST00000611481 ZNF219Q9P2Y4 722 aaPredicted RBP15.79■□□□□ 0.12
LINC00540-201ENST00000611481 SAMD1Q6SPF0 538 aaPredicted RBP15.77■□□□□ 0.12
LINC00540-201ENST00000611481 ABCB7O75027 752 aa15.67■□□□□ 0.1
LINC00540-201ENST00000611481 MYCNP04198 464 aaPredicted RBP15.61■□□□□ 0.09
LINC00540-201ENST00000611481 SLC4A1APQ9BWU0 796 aaKnown RBP15.55■□□□□ 0.08
LINC00540-201ENST00000611481 FOXD4L1Q9NU39 408 aa15.4■□□□□ 0.06
LINC00540-201ENST00000611481 POTEHQ6S545 545 aa15.39■□□□□ 0.05
LINC00540-201ENST00000611481 POLA2Q14181 598 aa15.36■□□□□ 0.05
LINC00540-201ENST00000611481 RBM42Q9BTD8 480 aaKnown RBP15.29■□□□□ 0.04
LINC00540-201ENST00000611481 ATF5Q9Y2D1 282 aaPredicted RBP15.19■□□□□ 0.02
LINC00540-201ENST00000611481 ZBTB22O15209 634 aa15.11■□□□□ 0.01
LINC00540-201ENST00000611481 ZBTB12Q9Y330 459 aaPredicted RBP15.09■□□□□ 0.01
LINC00540-201ENST00000611481 ATXN8OSP0DMR3 200 aa14.96□□□□□ -0.01
LINC00540-201ENST00000611481 CHRDL2Q6WN34 429 aa14.95□□□□□ -0.02
LINC00540-201ENST00000611481 AKT1S1Q96B36 256 aa14.92□□□□□ -0.02
LINC00540-201ENST00000611481 OSCARQ8IYS5 282 aa14.85□□□□□ -0.03
LINC00540-201ENST00000611481 REM2Q8IYK8 340 aaPredicted RBP14.76□□□□□ -0.05
LINC00540-201ENST00000611481 FBLN2P98095 1184 aa14.69□□□□□ -0.06
LINC00540-201ENST00000611481 SPDYE2BA6NHP3 402 aa14.6□□□□□ -0.07
LINC00540-201ENST00000611481 SPDYE6P0CI01 402 aa14.6□□□□□ -0.07
LINC00540-201ENST00000611481 SPDYE2Q495Y8 402 aa14.6□□□□□ -0.07
LINC00540-201ENST00000611481 PITPNM1O00562 1244 aa14.59□□□□□ -0.07
LINC00540-201ENST00000611481 PIP4P2Q8N4L2 257 aa14.57□□□□□ -0.08
LINC00540-201ENST00000611481 MKRN4PQ13434 485 aaPredicted RBP14.5□□□□□ -0.09
LINC00540-201ENST00000611481 FXR2P51116 673 aaKnown RBP eCLIP14.48□□□□□ -0.09
LINC00540-201ENST00000611481 SP7Q8TDD2 431 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-201ENST00000611481 ZNF692Q9BU19 519 aaPredicted RBP14.41□□□□□ -0.1
LINC00540-201ENST00000611481 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
LINC00540-201ENST00000611481 SSUH2Q9Y2M2 353 aa14.37□□□□□ -0.11
LINC00540-201ENST00000611481 SPDYE1Q8NFV5 336 aaPredicted RBP14.36□□□□□ -0.11
LINC00540-201ENST00000611481 HAX1O00165 279 aa14.35□□□□□ -0.11
LINC00540-201ENST00000611481 CLEC11AQ9Y240 323 aa14.32□□□□□ -0.12
LINC00540-201ENST00000611481 PRKAR2AP13861 404 aaKnown RBP14.22□□□□□ -0.13
LINC00540-201ENST00000611481 PABPN1Q86U42 306 aaKnown RBP eCLIP14.18□□□□□ -0.14
LINC00540-201ENST00000611481 EHMT2Q96KQ7 1210 aa14.16□□□□□ -0.14
LINC00540-201ENST00000611481 EVX2Q03828 476 aa14.11□□□□□ -0.15
LINC00540-201ENST00000611481 PRR29P0C7W0 189 aa14.09□□□□□ -0.15
LINC00540-201ENST00000611481 C19orf67A6NJJ6 358 aa14.02□□□□□ -0.17
LINC00540-201ENST00000611481 CHADLQ6NUI6 762 aa14.02□□□□□ -0.17
LINC00540-201ENST00000611481 FARP1Q9Y4F1 1045 aaPredicted RBP13.84□□□□□ -0.19
LINC00540-201ENST00000611481 SPDYE4A6NLX3 237 aa13.83□□□□□ -0.2
LINC00540-201ENST00000611481 GABBR2O75899 941 aa13.82□□□□□ -0.2
LINC00540-201ENST00000611481 STAG3Q9UJ98 1225 aa13.82□□□□□ -0.2
LINC00540-201ENST00000611481 CD44P16070 742 aaKnown RBP13.77□□□□□ -0.21
LINC00540-201ENST00000611481 CREBZFQ9NS37 354 aa13.69□□□□□ -0.22
LINC00540-201ENST00000611481 CLCN6P51797 869 aa13.65□□□□□ -0.22
LINC00540-201ENST00000611481 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
LINC00540-201ENST00000611481 ZNF579Q8NAF0 562 aaKnown RBP13.55□□□□□ -0.24
LINC00540-201ENST00000611481 LHX8Q68G74 356 aa13.52□□□□□ -0.25
LINC00540-201ENST00000611481 POTEIP0CG38 1075 aa13.5□□□□□ -0.25
LINC00540-201ENST00000611481 PAK3O75914 559 aaPredicted RBP13.49□□□□□ -0.25
LINC00540-201ENST00000611481 NPM1P06748 294 aaKnown RBP eCLIP13.49□□□□□ -0.25
LINC00540-201ENST00000611481 PROM2Q8N271 834 aa13.47□□□□□ -0.25
LINC00540-201ENST00000611481 DCBLD2Q96PD2 775 aa13.47□□□□□ -0.25
LINC00540-201ENST00000611481 MNX1P50219 401 aaPredicted RBP13.44□□□□□ -0.26
LINC00540-201ENST00000611481 GALR2O43603 387 aaPredicted RBP13.37□□□□□ -0.27
LINC00540-201ENST00000611481 PHF12Q96QT6 1004 aa13.35□□□□□ -0.27
LINC00540-201ENST00000611481 PLEKHG5O94827 1062 aa13.25□□□□□ -0.29
LINC00540-201ENST00000611481 MIER1Q8N108 512 aa13.21□□□□□ -0.29
LINC00540-201ENST00000611481 TSPYL2Q9H2G4 693 aaPredicted RBP13.21□□□□□ -0.29
LINC00540-201ENST00000611481 MS4A3Q96HJ5 214 aa13.18□□□□□ -0.3
LINC00540-201ENST00000611481 CCDC61Q9Y6R9 512 aa13.14□□□□□ -0.31
LINC00540-201ENST00000611481 ASTLQ6HA08 431 aaPredicted RBP13.11□□□□□ -0.31
LINC00540-201ENST00000611481 PELP1Q8IZL8 1130 aaKnown RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms