RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ADAM12O43184 909 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 TGM5O43548 720 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 GLUD1P00367 558 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 IDEP14735 1019 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 CYP3A5P20815 502 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 LRPAP1P30533 357 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 SSTR3P32745 418 aaPredicted RBP15.46■□□□□ 0.07
USP28-209ENST00000540925 ALCAMQ13740 583 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 PSMD5Q16401 504 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 RARS2Q5T160 578 aaKnown RBP15.46■□□□□ 0.07
USP28-209ENST00000540925 SLFN12LQ6IEE8 588 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 GPR149Q86SP6 731 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 TMEM87AQ8NBN3 555 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 NECTIN4Q96NY8 510 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 LRRC27Q9C0I9 530 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 POMKQ9H5K3 350 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 C11orf16Q9NQ32 467 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 MAN1C1Q9NR34 630 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 TBC1D7Q9P0N9 293 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 MTRRQ9UBK8 725 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 HPSEQ9Y251 543 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 PCDHB13Q9Y5F0 798 aa15.46■□□□□ 0.07
USP28-209ENST00000540925 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.46■□□□□ 0.07
USP28-209ENST00000540925 MTCL1Q9Y4B5 1905 aaKnown RBP15.46■□□□□ 0.07
USP28-209ENST00000540925 ACTN4O43707 911 aaKnown RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 TBC1D4O60343 1298 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 CMA1P23946 247 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 TKTP29401 623 aaKnown RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 HOXD13P35453 343 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 MTHFRP42898 656 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 MATR3P43243 847 aaKnown RBP eCLIP15.45■□□□□ 0.06
USP28-209ENST00000540925 BRCC3P46736 316 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 AARSP49588 968 aaKnown RBP eCLIP15.45■□□□□ 0.06
USP28-209ENST00000540925 PPP2R3AQ06190 1150 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 MRPL58Q14197 206 aaKnown RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 ADALQ6DHV7 355 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 CES5AQ6NT32 575 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 PDXDC1Q6P996 788 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 RSPO2Q6UXX9 243 aaPredicted RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 TMC5Q6UXY8 1006 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 C15orf39Q6ZRI6 1047 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 EPM2AIP1Q7L775 607 aaPredicted RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 CCDC65Q8IXS2 484 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 GLIS3Q8NEA6 775 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 ZNF707Q96C28 371 aaPredicted RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 ACCSQ96QU6 501 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 PLEKHA4Q9H4M7 779 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 RPF1Q9H9Y2 349 aaKnown RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 FAM13BQ9NYF5 915 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 FBXW11Q9UKB1 542 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 AGO2Q9UKV8 859 aaKnown RBP15.45■□□□□ 0.06
USP28-209ENST00000540925 KCNH3Q9ULD8 1083 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 BACE2Q9Y5Z0 518 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 C2orf16Q68DN1 1984 aa15.45■□□□□ 0.06
USP28-209ENST00000540925 I3L4J1 428 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 TRAPPC3O43617 180 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 GCNT3O95395 438 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 WEE2P0C1S8 567 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 ACOT2P49753 483 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 KRT85P78386 507 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 AMPD3Q01432 767 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 SPAG1Q07617 926 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 SPATA1Q5VX52 437 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 RNF135Q8IUD6 432 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 CD302Q8IX05 232 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 ZSWIM2Q8NEG5 633 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 HPS3Q969F9 1004 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 KIF12Q96FN5 646 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 SUSD3Q96L08 255 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 RIPOR3Q96MK2 946 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 DPP7Q9UHL4 492 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 UBQLN1Q9UMX0 589 aaKnown RBP15.44■□□□□ 0.06
USP28-209ENST00000540925 EXOC7Q9UPT5 735 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 DERAQ9Y315 318 aa15.44■□□□□ 0.06
USP28-209ENST00000540925 TCHHQ07283 1943 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 M0QZQ0 153 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 SYN3O14994 580 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 SLFN14P0C7P3 912 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 GARTP22102 1010 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 CASP1P29466 404 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 RAB33AQ14088 237 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 BECN1Q14457 450 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 POSTNQ15063 836 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 JADE1Q6IE81 842 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 SLC8B1Q6J4K2 584 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 CYP26C1Q6V0L0 522 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 ANKS3Q6ZW76 656 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 UNC13DQ70J99 1090 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 CEP57Q86XR8 500 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 PALB2Q86YC2 1186 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 SPATA32Q96LK8 384 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 PYM1Q9BRP8 204 aaKnown RBP15.43■□□□□ 0.06
USP28-209ENST00000540925 ASB7Q9H672 318 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 C2CD2Q9Y426 696 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 MUC6Q6W4X9 2439 aa15.43■□□□□ 0.06
USP28-209ENST00000540925 ANO9A1A5B4 782 aa15.42■□□□□ 0.06
USP28-209ENST00000540925 EIF3DO15371 548 aaKnown RBP eCLIP15.42■□□□□ 0.06
USP28-209ENST00000540925 DCXO43602 365 aa15.42■□□□□ 0.06
USP28-209ENST00000540925 KLRC4O43908 158 aa15.42■□□□□ 0.06
USP28-209ENST00000540925 RFPL2O75678 378 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms