RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	TFS1	P14306	219 aa		4.63	□□□□□ -1.67
UBP9	YER098W	URA6	P15700	204 aa		4.63	□□□□□ -1.67
UBP9	YER098W	MSK1	P32048	576 aa		4.63	□□□□□ -1.67
UBP9	YER098W	SKN1	P33336	771 aa		4.63	□□□□□ -1.67
UBP9	YER098W	ASP1	P38986	381 aa	Predicted RBP	4.63	□□□□□ -1.67
UBP9	YER098W	GAT2	P40209	560 aa		4.63	□□□□□ -1.67
UBP9	YER098W	IRC24	P40580	263 aa		4.63	□□□□□ -1.67
UBP9	YER098W	SEC13	Q04491	297 aa	Known RBP	4.63	□□□□□ -1.67
UBP9	YER098W	RNH202	Q05635	350 aa		4.63	□□□□□ -1.67
UBP9	YER098W	YDL218W	Q07629	317 aa		4.63	□□□□□ -1.67
UBP9	YER098W	PFA4	Q12006	378 aa		4.63	□□□□□ -1.67
UBP9	YER098W	SEC59	P20048	519 aa		4.62	□□□□□ -1.67
UBP9	YER098W	RPB8	P20436	146 aa		4.62	□□□□□ -1.67
UBP9	YER098W	SFK1	P35735	353 aa		4.62	□□□□□ -1.67
UBP9	YER098W	COS9	P36034	407 aa		4.62	□□□□□ -1.67
UBP9	YER098W	GLC8	P41818	229 aa		4.62	□□□□□ -1.67
UBP9	YER098W	ADO1	P47143	340 aa	Known RBP	4.62	□□□□□ -1.67
UBP9	YER098W	MDM34	P53083	459 aa		4.62	□□□□□ -1.67
UBP9	YER098W	MRP51	Q02950	344 aa		4.62	□□□□□ -1.67
UBP9	YER098W	CUE4	Q04201	117 aa	Predicted RBP	4.62	□□□□□ -1.67
UBP9	YER098W	ECM18	Q04623	453 aa		4.62	□□□□□ -1.67
UBP9	YER098W	HTB1	P02293	131 aa	Known RBP	4.62	□□□□□ -1.67
UBP9	YER098W	HTB2	P02294	131 aa		4.62	□□□□□ -1.67
UBP9	YER098W	KIN28	P06242	306 aa		4.62	□□□□□ -1.67
UBP9	YER098W	RPS2	P25443	254 aa	Known RBP	4.62	□□□□□ -1.67
UBP9	YER098W	NTF2	P33331	125 aa	Known RBP	4.62	□□□□□ -1.67
UBP9	YER098W	YUH1	P35127	236 aa		4.62	□□□□□ -1.67
UBP9	YER098W	AIM29	P36154	155 aa		4.62	□□□□□ -1.67
UBP9	YER098W	CBP4	P37267	147 aa		4.62	□□□□□ -1.67
UBP9	YER098W	EMC5	P40540	141 aa		4.62	□□□□□ -1.67
UBP9	YER098W	SYF2	P53277	215 aa	Predicted RBP	4.62	□□□□□ -1.67
UBP9	YER098W	YIF1	P53845	314 aa	Known RBP	4.62	□□□□□ -1.67
UBP9	YER098W	YMR252C	Q04814	134 aa		4.62	□□□□□ -1.67
UBP9	YER098W	ICT1	Q12385	394 aa		4.62	□□□□□ -1.67
UBP9	YER098W	YLR111W	Q12528	110 aa		4.62	□□□□□ -1.67
UBP9	YER098W	SPT3	P06844	337 aa		4.61	□□□□□ -1.67
UBP9	YER098W	AHC2	P25649	128 aa		4.61	□□□□□ -1.67
UBP9	YER098W	COQ3	P27680	312 aa		4.61	□□□□□ -1.67
UBP9	YER098W	MRPL11	P36521	249 aa	Predicted RBP	4.61	□□□□□ -1.67
UBP9	YER098W	YHR177W	P38867	453 aa		4.61	□□□□□ -1.67
UBP9	YER098W	PHO90	P39535	881 aa		4.61	□□□□□ -1.67
UBP9	YER098W	CIN5	P40917	295 aa		4.61	□□□□□ -1.67
UBP9	YER098W	SOL1	P50278	321 aa		4.61	□□□□□ -1.67
UBP9	YER098W	COG7	P53195	279 aa		4.61	□□□□□ -1.67
UBP9	YER098W	IGO1	P53897	168 aa		4.61	□□□□□ -1.67
UBP9	YER098W	YPL067C	Q02754	198 aa		4.61	□□□□□ -1.67
UBP9	YER098W	YMR253C	Q04835	414 aa		4.61	□□□□□ -1.67
UBP9	YER098W	MRX9	Q07349	420 aa	Known RBP	4.61	□□□□□ -1.67
UBP9	YER098W	MEX67	Q99257	599 aa	Known RBP	4.61	□□□□□ -1.67
UBP9	YER098W	CDC21	P06785	304 aa		4.61	□□□□□ -1.67
UBP9	YER098W	RPI1	P23250	407 aa	Known RBP	4.61	□□□□□ -1.67
UBP9	YER098W	GPI12	P23797	304 aa		4.61	□□□□□ -1.67
UBP9	YER098W	INM1	P38710	295 aa		4.61	□□□□□ -1.67
UBP9	YER098W	PTH1	P38876	190 aa	Known RBP	4.61	□□□□□ -1.67
UBP9	YER098W	FLX1	P40464	311 aa		4.61	□□□□□ -1.67
UBP9	YER098W	CFD1	P40558	293 aa		4.61	□□□□□ -1.67
UBP9	YER098W	TES1	P41903	349 aa	Known RBP	4.61	□□□□□ -1.67
UBP9	YER098W	UBP8	P50102	471 aa		4.61	□□□□□ -1.67
UBP9	YER098W	UFD1	P53044	361 aa		4.61	□□□□□ -1.67
UBP9	YER098W	PNC1	P53184	216 aa	Known RBP	4.61	□□□□□ -1.67
UBP9	YER098W	GIM3	P53900	129 aa		4.61	□□□□□ -1.67
UBP9	YER098W	NRK1	P53915	240 aa		4.61	□□□□□ -1.67
UBP9	YER098W	CYT2	Q00873	224 aa		4.61	□□□□□ -1.67
UBP9	YER098W	YDR415C	Q04033	374 aa	Predicted RBP	4.61	□□□□□ -1.67
UBP9	YER098W	UTP15	Q04305	513 aa	Known RBP	4.61	□□□□□ -1.67
UBP9	YER098W	KEI1	Q06346	221 aa		4.61	□□□□□ -1.67
UBP9	YER098W	FDH1	Q08911	376 aa		4.61	□□□□□ -1.67
UBP9	YER098W	PHO2	P07269	559 aa		4.6	□□□□□ -1.67
UBP9	YER098W	PRE7	P23724	241 aa	Known RBP	4.6	□□□□□ -1.67
UBP9	YER098W	RNA15	P25299	296 aa	Predicted RBP	4.6	□□□□□ -1.67
UBP9	YER098W	PET18	P25362	215 aa		4.6	□□□□□ -1.67
UBP9	YER098W	CHL4	P38907	458 aa		4.6	□□□□□ -1.67
UBP9	YER098W	ABM1	P47146	123 aa		4.6	□□□□□ -1.67
UBP9	YER098W	NUP57	P48837	541 aa		4.6	□□□□□ -1.67
UBP9	YER098W	TIM21	P53220	239 aa		4.6	□□□□□ -1.67
UBP9	YER098W	MTQ1	P53944	314 aa		4.6	□□□□□ -1.67
UBP9	YER098W	NUP100	Q02629	959 aa		4.6	□□□□□ -1.67
UBP9	YER098W	RIM13	Q03792	727 aa		4.6	□□□□□ -1.67
UBP9	YER098W	BSP1	Q06604	576 aa		4.6	□□□□□ -1.67
UBP9	YER098W	ERP3	Q12403	225 aa		4.6	□□□□□ -1.67
UBP9	YER098W	YNR034W-A	Q3E841	98 aa		4.6	□□□□□ -1.67
UBP9	YER098W	ADH2	P00331	348 aa	Known RBP	4.6	□□□□□ -1.67
UBP9	YER098W	PPH21	P23594	369 aa		4.6	□□□□□ -1.67
UBP9	YER098W	CLB6	P32943	380 aa		4.6	□□□□□ -1.67
UBP9	YER098W	DOA1	P36037	715 aa		4.6	□□□□□ -1.67
UBP9	YER098W	YBR096W	P38256	230 aa		4.6	□□□□□ -1.67
UBP9	YER098W	PEX31	P53203	462 aa		4.6	□□□□□ -1.67
UBP9	YER098W	SHY1	P53266	389 aa		4.6	□□□□□ -1.67
UBP9	YER098W	PKR1	Q03880	122 aa	Known RBP	4.6	□□□□□ -1.67
UBP9	YER098W	YLR179C	Q06252	201 aa	Known RBP	4.6	□□□□□ -1.67
UBP9	YER098W	SDO1	Q07953	250 aa	Known RBP	4.6	□□□□□ -1.67
UBP9	YER098W	CSI2	Q08054	341 aa		4.6	□□□□□ -1.67
UBP9	YER098W	NDD1	Q08887	554 aa		4.6	□□□□□ -1.67
UBP9	YER098W	FYV7	Q12247	151 aa		4.6	□□□□□ -1.67
UBP9	YER098W	TFC7	Q12415	435 aa		4.6	□□□□□ -1.67
UBP9	YER098W	GAL4	P04386	881 aa		4.59	□□□□□ -1.67
UBP9	YER098W	EXG1	P23776	448 aa	Known RBP	4.59	□□□□□ -1.67
UBP9	YER098W	PAU24	P38155	120 aa		4.59	□□□□□ -1.67
UBP9	YER098W	RRP3	P38712	501 aa	Known RBP	4.59	□□□□□ -1.67
UBP9	YER098W	CHS7	P38843	316 aa		4.59	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 9.1 ms