RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MAP3K14Q99558 947 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 KAT14Q9H8E8 782 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 INTS13Q9NVM9 706 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 SFMBT1Q9UHJ3 866 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 RWDD2AQ9UIY3 292 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 DBNLQ9UJU6 430 aaKnown RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 ODF2LQ9ULJ1 636 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 LUC7L2Q9Y383 392 aaKnown RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 SRPRBQ9Y5M8 271 aaKnown RBP7.21□□□□□ -1.26
USP28-202ENST00000535607 TAF6LQ9Y6J9 622 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 MROH7-TTC4A0A0A0MT08 1334 aa7.21□□□□□ -1.26
USP28-202ENST00000535607 TNRC6CQ9HCJ0 1690 aaKnown RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 LRRC10BA6NIK2 292 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 HMGB1P1B2RPK0 211 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 H7C1D1 291 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 IRS4O14654 1257 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 POLR2DO15514 142 aaKnown RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 ZBTB43O43298 467 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 PDE8AO60658 829 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 THBDP07204 575 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 NAT1P18440 290 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 HOXA7P31268 230 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 KRT9P35527 623 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 GRIA2P42262 883 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 CD97P48960 835 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 MRPL12P52815 198 aaKnown RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 RCAN1P53805 252 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 CTSWP56202 376 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 SLC8A3P57103 927 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 TEKQ02763 1124 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 ACTN3Q08043 901 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 GOLGA8FQ08AF8 430 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 GOLGA8DPQ0D2H9 430 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 KCNAB2Q13303 367 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 NFIXQ14938 502 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 SLC14A2Q15849 920 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 CFAP58Q5T655 872 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 RNF187Q5TA31 235 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 EMC10Q5UCC4 262 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 YOD1Q5VVQ6 348 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 TBC1D9BQ66K14 1250 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 WWC2Q6AWC2 1192 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 PPP4R3AQ6IN85 833 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 KDM7AQ6ZMT4 941 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 CCDC129Q6ZRS4 1044 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 ZNF572Q7Z3I7 529 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 NBPF5PQ86XG9 351 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 IQCA1Q86XH1 822 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 DTX1Q86Y01 620 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 COL23A1Q86Y22 540 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 SPPL2CQ8IUH8 684 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 OXR1Q8N573 874 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 CNBD1Q8NA66 436 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 TMEM145Q8NBT3 493 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 AENQ8WTP8 325 aaKnown RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 CAVIN3Q969G5 261 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 ZBTB9Q96C00 473 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 CCDC114Q96M63 670 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 SEC62Q99442 399 aaKnown RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 SH3GL2Q99962 352 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 JPH2Q9BR39 696 aaPredicted RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 MTA3Q9BTC8 594 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 VCPKMTQ9H867 229 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 JADE2Q9NQC1 790 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 KLC4Q9NSK0 619 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 AATFQ9NY61 560 aaKnown RBP eCLIP7.2□□□□□ -1.26
USP28-202ENST00000535607 SWAP70Q9UH65 585 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 SRP68Q9UHB9 627 aaKnown RBP7.2□□□□□ -1.26
USP28-202ENST00000535607 MCM8Q9UJA3 840 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 GUCA1BQ9UMX6 200 aa7.2□□□□□ -1.26
USP28-202ENST00000535607 ERICH2A1L162 156 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 EFCAB14O75071 495 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 CIAO1O76071 339 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 SCG5P05408 212 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 MYL1P05976 194 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 IDEP14735 1019 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 RAC2P15153 192 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 EEF1GP26641 437 aaKnown RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 CD96P40200 585 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 SSR1P43307 286 aaKnown RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 COPB1P53618 953 aaKnown RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 NAP1L1P55209 391 aaKnown RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 GABREP78334 506 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 SARNPP82979 210 aaKnown RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 CDK17Q00537 523 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 MTF1Q14872 753 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 TTF1Q15361 905 aaPredicted RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 CCDC152Q4G0S7 254 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 SLC10A5Q5PT55 438 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 WLSQ5T9L3 541 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 SLC9C2Q5TAH2 1124 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 SUSD4Q5VX71 490 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 CD302Q8IX05 232 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 MB21D2Q8IYB1 491 aaPredicted RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 EIF1ADQ8N9N8 165 aaKnown RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 NOA1Q8NC60 698 aaKnown RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 SPATA20Q8TB22 786 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 DCAF4Q8WV16 495 aa7.19□□□□□ -1.26
USP28-202ENST00000535607 N4BP2L2Q92802 583 aaPredicted RBP7.19□□□□□ -1.26
USP28-202ENST00000535607 DIO2Q92813 273 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 311.4 ms