RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 LRP5O75197 1615 aa8.71□□□□□ -1.02
SDCBP-208ENST00000520228 USP42Q9H9J4 1324 aaKnown RBP8.71□□□□□ -1.02
SDCBP-208ENST00000520228 CHL1O00533 1208 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 IL6STP40189 918 aaPredicted RBP8.7□□□□□ -1.02
SDCBP-208ENST00000520228 EIF5P55010 431 aaKnown RBP8.7□□□□□ -1.02
SDCBP-208ENST00000520228 LGALS4P56470 323 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 KIAA2012Q0VF49 1180 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 USP10Q14694 798 aaKnown RBP8.7□□□□□ -1.02
SDCBP-208ENST00000520228 NT5DC1Q5TFE4 455 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 GAREM2Q75VX8 874 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 FAM9BQ8IZU0 186 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 SYT8Q8NBV8 401 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 FUBP3Q96I24 572 aaKnown RBP eCLIP8.7□□□□□ -1.02
SDCBP-208ENST00000520228 OSBPL6Q9BZF3 934 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 EVLQ9UI08 416 aaPredicted RBP8.7□□□□□ -1.02
SDCBP-208ENST00000520228 USP18Q9UMW8 372 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 EDARQ9UNE0 448 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 CDY2AQ9Y6F7 541 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 CASZ1Q86V15 1759 aa8.7□□□□□ -1.02
SDCBP-208ENST00000520228 C5P01031 1676 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 SCN11AQ9UI33 1791 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 SHTN1A0MZ66 631 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCDHGA12O60330 932 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 B4GALT3O60512 393 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 MT-CO1P00395 513 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 CFBP00751 764 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 GJA9P57773 515 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 JAG1P78504 1218 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 SRSF2Q01130 221 aaKnown RBP8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PPARAQ07869 468 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCOLCEQ15113 449 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 GPR155Q7Z3F1 870 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 SLC13A1Q9BZW2 595 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 QRSL1Q9H0R6 528 aaKnown RBP8.69□□□□□ -1.02
SDCBP-208ENST00000520228 ZNF277Q9NRM2 450 aaPredicted RBP8.69□□□□□ -1.02
SDCBP-208ENST00000520228 NARFQ9UHQ1 456 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 SYNPO2Q9UMS6 1093 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 ZDHHC9Q9Y397 364 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCDHGA9Q9Y5G4 932 aaKnown RBP8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCDHGA8Q9Y5G5 932 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCDHGA7Q9Y5G6 932 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCDHGA6Q9Y5G7 932 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCDHGA3Q9Y5H0 932 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 PCDHGA2Q9Y5H1 932 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 COL15A1P39059 1388 aa8.69□□□□□ -1.02
SDCBP-208ENST00000520228 MYBL2P10244 700 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 PIP4K2AP48426 406 aaPredicted RBP8.68□□□□□ -1.02
SDCBP-208ENST00000520228 MUM1Q2TAK8 710 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 TOR2AQ5JU69 321 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 PGM2L1Q6PCE3 622 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 KLHDC10Q6PID8 442 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 KBTBD2Q8IY47 623 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 TSPEARQ8WU66 669 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 WDR92Q96MX6 357 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 SMAD5Q99717 465 aaKnown RBP8.68□□□□□ -1.02
SDCBP-208ENST00000520228 KIAA1683Q9H0B3 1180 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 DNAJC28Q9NX36 388 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 DNAI1Q9UI46 699 aa8.68□□□□□ -1.02
SDCBP-208ENST00000520228 CTDP1Q9Y5B0 961 aaPredicted RBP8.68□□□□□ -1.02
SDCBP-208ENST00000520228 ALDH1L1O75891 902 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 ZNF853P0CG23 659 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 MTHFD2P13995 350 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 EIF2S2P20042 333 aaKnown RBP8.67□□□□□ -1.02
SDCBP-208ENST00000520228 MRE11P49959 708 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 NEK2P51955 445 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 GNAI1P63096 354 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 PCBP2Q15366 365 aaKnown RBP eCLIP8.67□□□□□ -1.02
SDCBP-208ENST00000520228 ZNF831Q5JPB2 1677 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 AGBL4Q5VU57 503 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 RALYLQ86SE5 291 aaKnown RBP8.67□□□□□ -1.02
SDCBP-208ENST00000520228 AUTS2Q8WXX7 1259 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 CEP89Q96ST8 783 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 DPP7Q9UHL4 492 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 SLC4A7Q9Y6M7 1214 aa8.67□□□□□ -1.02
SDCBP-208ENST00000520228 CCER2I3L3R5 266 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 NRP2O60462 931 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 CAMTA2O94983 1202 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 HNRNPLP14866 589 aaKnown RBP eCLIP8.66□□□□□ -1.02
SDCBP-208ENST00000520228 BMP7P18075 431 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 AGXTP21549 392 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 TM4SF1P30408 202 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 MEOX1P50221 254 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 SESN2P58004 480 aaPredicted RBP8.66□□□□□ -1.02
SDCBP-208ENST00000520228 DDR1Q08345 913 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 SPIDRQ14159 915 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 NFIXQ14938 502 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 TTF1Q15361 905 aaPredicted RBP8.66□□□□□ -1.02
SDCBP-208ENST00000520228 TBR1Q16650 682 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 PTPN21Q16825 1174 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 KRT24Q2M2I5 525 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 FAM124AQ86V42 546 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 RTKN2Q8IZC4 609 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 NGEFQ8N5V2 710 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 GFM2Q969S9 779 aaKnown RBP8.66□□□□□ -1.02
SDCBP-208ENST00000520228 XYLT2Q9H1B5 865 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 OR10A2Q9H208 303 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 GPR45Q9Y5Y3 372 aa8.66□□□□□ -1.02
SDCBP-208ENST00000520228 POLRMTO00411 1230 aaKnown RBP8.65□□□□□ -1.02
SDCBP-208ENST00000520228 MYL6BP14649 208 aa8.65□□□□□ -1.02
SDCBP-208ENST00000520228 RRADP55042 308 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms