RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 AEBP2Q6ZN18 517 aaPredicted RBP32.59■■■□□ 2.81
SDCBP-208ENST00000520228 CHIC1Q5VXU3 224 aa32.09■■■□□ 2.73
SDCBP-208ENST00000520228 PHF23Q9BUL5 403 aaPredicted RBP28.29■■■□□ 2.12
SDCBP-208ENST00000520228 SENP3Q9H4L4 574 aaPredicted RBP27.53■■■□□ 2
SDCBP-208ENST00000520228 PLPPR3Q6T4P5 718 aa26.15■■□□□ 1.78
SDCBP-208ENST00000520228 FOXD1Q16676 465 aa25.56■■□□□ 1.68
SDCBP-208ENST00000520228 PPP6R1Q9UPN7 881 aa24.85■■□□□ 1.57
SDCBP-208ENST00000520228 ADRA2BP18089 450 aa24.8■■□□□ 1.56
SDCBP-208ENST00000520228 PIAS4Q8N2W9 510 aaPredicted RBP24.11■■□□□ 1.45
SDCBP-208ENST00000520228 MSH5O43196 834 aa23.41■■□□□ 1.34
SDCBP-208ENST00000520228 PPP4R3CPQ6ZMV5 832 aa23.09■■□□□ 1.29
SDCBP-208ENST00000520228 KCNA4P22459 653 aa22.89■■□□□ 1.25
SDCBP-208ENST00000520228 SCAF1Q9H7N4 1312 aaKnown RBP22.64■■□□□ 1.22
SDCBP-208ENST00000520228 NCBP3Q53F19 620 aaKnown RBP22.52■■□□□ 1.2
SDCBP-208ENST00000520228 MAPK8IP2Q13387 824 aaPredicted RBP22.43■■□□□ 1.18
SDCBP-208ENST00000520228 CNKSR2Q8WXI2 1034 aa22.38■■□□□ 1.17
SDCBP-208ENST00000520228 NPM3O75607 178 aaKnown RBP22.26■■□□□ 1.15
SDCBP-208ENST00000520228 DMRT2Q9Y5R5 561 aa22.06■■□□□ 1.12
SDCBP-208ENST00000520228 RNF216Q9NWF9 866 aaPredicted RBP21.88■■□□□ 1.09
SDCBP-208ENST00000520228 SLC4A1APQ9BWU0 796 aaKnown RBP21.81■■□□□ 1.08
SDCBP-208ENST00000520228 HOXD11P31277 338 aaPredicted RBP21.75■■□□□ 1.07
SDCBP-208ENST00000520228 DNAJC5BQ9UF47 199 aa21.68■■□□□ 1.06
SDCBP-208ENST00000520228 EHMT2Q96KQ7 1210 aa21.5■■□□□ 1.03
SDCBP-208ENST00000520228 CSRNP3Q8WYN3 585 aa21.22■□□□□ 0.99
SDCBP-208ENST00000520228 ZBTB22O15209 634 aa21.12■□□□□ 0.97
SDCBP-208ENST00000520228 SLC4A2P04920 1241 aa20.98■□□□□ 0.95
SDCBP-208ENST00000520228 FOXD4L1Q9NU39 408 aa20.97■□□□□ 0.95
SDCBP-208ENST00000520228 DCAF8L1A6NGE4 600 aa20.95■□□□□ 0.94
SDCBP-208ENST00000520228 POTEDQ86YR6 584 aa20.83■□□□□ 0.93
SDCBP-208ENST00000520228 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.61■□□□□ 0.89
SDCBP-208ENST00000520228 MYCNP04198 464 aaPredicted RBP20.52■□□□□ 0.88
SDCBP-208ENST00000520228 U3KPZ7 1027 aaPredicted RBP20.4■□□□□ 0.86
SDCBP-208ENST00000520228 ATXN8OSP0DMR3 200 aa20.24■□□□□ 0.83
SDCBP-208ENST00000520228 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.17■□□□□ 0.82
SDCBP-208ENST00000520228 HNRNPUL2Q1KMD3 747 aaKnown RBP20.17■□□□□ 0.82
SDCBP-208ENST00000520228 SAMD1Q6SPF0 538 aaPredicted RBP20.13■□□□□ 0.81
SDCBP-208ENST00000520228 RNF39Q9H2S5 420 aa20.13■□□□□ 0.81
SDCBP-208ENST00000520228 ATF5Q9Y2D1 282 aaPredicted RBP20.01■□□□□ 0.79
SDCBP-208ENST00000520228 C1QBPQ07021 282 aaKnown RBP19.88■□□□□ 0.77
SDCBP-208ENST00000520228 APLP2Q06481 763 aa19.87■□□□□ 0.77
SDCBP-208ENST00000520228 SPINK5Q9NQ38 1064 aaPredicted RBP19.72■□□□□ 0.75
SDCBP-208ENST00000520228 ZNF219Q9P2Y4 722 aaPredicted RBP19.63■□□□□ 0.73
SDCBP-208ENST00000520228 CAPN15O75808 1086 aa19.56■□□□□ 0.72
SDCBP-208ENST00000520228 TRHP20396 242 aaPredicted RBP19.53■□□□□ 0.72
SDCBP-208ENST00000520228 POLA2Q14181 598 aa19.33■□□□□ 0.68
SDCBP-208ENST00000520228 CACNB1Q02641 598 aaPredicted RBP19.31■□□□□ 0.68
SDCBP-208ENST00000520228 DSG3P32926 999 aa19.25■□□□□ 0.67
SDCBP-208ENST00000520228 ABCB7O75027 752 aa19.23■□□□□ 0.67
SDCBP-208ENST00000520228 MKRN4PQ13434 485 aaPredicted RBP19.17■□□□□ 0.66
SDCBP-208ENST00000520228 FKBP8Q14318 412 aa19.09■□□□□ 0.65
SDCBP-208ENST00000520228 FBLN2P98095 1184 aa19.04■□□□□ 0.64
SDCBP-208ENST00000520228 ZBTB12Q9Y330 459 aaPredicted RBP19.02■□□□□ 0.64
SDCBP-208ENST00000520228 SPDYE4A6NLX3 237 aa18.8■□□□□ 0.6
SDCBP-208ENST00000520228 OSCARQ8IYS5 282 aa18.66■□□□□ 0.58
SDCBP-208ENST00000520228 PROM2Q8N271 834 aa18.66■□□□□ 0.58
SDCBP-208ENST00000520228 SPDYE2BA6NHP3 402 aa18.57■□□□□ 0.56
SDCBP-208ENST00000520228 SPDYE6P0CI01 402 aa18.57■□□□□ 0.56
SDCBP-208ENST00000520228 SPDYE2Q495Y8 402 aa18.57■□□□□ 0.56
SDCBP-208ENST00000520228 ZNF692Q9BU19 519 aaPredicted RBP18.5■□□□□ 0.55
SDCBP-208ENST00000520228 SSUH2Q9Y2M2 353 aa18.49■□□□□ 0.55
SDCBP-208ENST00000520228 FBXO3Q9UK99 471 aa18.32■□□□□ 0.52
SDCBP-208ENST00000520228 PABPN1Q86U42 306 aaKnown RBP eCLIP18.28■□□□□ 0.52
SDCBP-208ENST00000520228 RBM42Q9BTD8 480 aaKnown RBP18.27■□□□□ 0.52
SDCBP-208ENST00000520228 AKT1S1Q96B36 256 aa18.15■□□□□ 0.5
SDCBP-208ENST00000520228 VASPP50552 380 aaPredicted RBP18.1■□□□□ 0.49
SDCBP-208ENST00000520228 STAG3Q9UJ98 1225 aa18.04■□□□□ 0.48
SDCBP-208ENST00000520228 REM2Q8IYK8 340 aaPredicted RBP17.98■□□□□ 0.47
SDCBP-208ENST00000520228 AMER1Q5JTC6 1135 aaPredicted RBP17.91■□□□□ 0.46
SDCBP-208ENST00000520228 IFNLR1Q8IU57 520 aaPredicted RBP17.91■□□□□ 0.46
SDCBP-208ENST00000520228 SPDYE1Q8NFV5 336 aaPredicted RBP17.91■□□□□ 0.46
SDCBP-208ENST00000520228 RTN4Q9NQC3 1192 aaKnown RBP17.9■□□□□ 0.46
SDCBP-208ENST00000520228 PITPNM1O00562 1244 aa17.77■□□□□ 0.44
SDCBP-208ENST00000520228 CLEC11AQ9Y240 323 aa17.77■□□□□ 0.44
SDCBP-208ENST00000520228 MIER1Q8N108 512 aa17.76■□□□□ 0.43
SDCBP-208ENST00000520228 PLCD3Q8N3E9 789 aa17.75■□□□□ 0.43
SDCBP-208ENST00000520228 PRR29P0C7W0 189 aa17.69■□□□□ 0.42
SDCBP-208ENST00000520228 KLHL34Q8N239 644 aa17.64■□□□□ 0.41
SDCBP-208ENST00000520228 PLEKHG5O94827 1062 aa17.6■□□□□ 0.41
SDCBP-208ENST00000520228 SPOCK2Q92563 424 aa17.6■□□□□ 0.41
SDCBP-208ENST00000520228 CREBZFQ9NS37 354 aa17.6■□□□□ 0.41
SDCBP-208ENST00000520228 ZBTB47Q9UFB7 747 aaPredicted RBP17.56■□□□□ 0.4
SDCBP-208ENST00000520228 MNX1P50219 401 aaPredicted RBP17.51■□□□□ 0.39
SDCBP-208ENST00000520228 PKD2Q13563 968 aa17.44■□□□□ 0.38
SDCBP-208ENST00000520228 CHRDL2Q6WN34 429 aa17.42■□□□□ 0.38
SDCBP-208ENST00000520228 FXR2P51116 673 aaKnown RBP eCLIP17.41■□□□□ 0.38
SDCBP-208ENST00000520228 NUBP1P53384 320 aa17.37■□□□□ 0.37
SDCBP-208ENST00000520228 CHADLQ6NUI6 762 aa17.37■□□□□ 0.37
SDCBP-208ENST00000520228 PRKAR2AP13861 404 aaKnown RBP17.29■□□□□ 0.36
SDCBP-208ENST00000520228 PIP4P2Q8N4L2 257 aa17.29■□□□□ 0.36
SDCBP-208ENST00000520228 NPM1P06748 294 aaKnown RBP eCLIP17.25■□□□□ 0.35
SDCBP-208ENST00000520228 FARP1Q9Y4F1 1045 aaPredicted RBP17.25■□□□□ 0.35
SDCBP-208ENST00000520228 CIZ1Q9ULV3 898 aaPredicted RBP17.22■□□□□ 0.35
SDCBP-208ENST00000520228 RASEFQ8IZ41 740 aa17.2■□□□□ 0.34
SDCBP-208ENST00000520228 ECM2O94769 699 aaPredicted RBP17.19■□□□□ 0.34
SDCBP-208ENST00000520228 GSE1Q14687 1217 aa17.19■□□□□ 0.34
SDCBP-208ENST00000520228 FAM212AQ96EL1 285 aa17.14■□□□□ 0.33
SDCBP-208ENST00000520228 DCAF8Q5TAQ9 597 aa17.13■□□□□ 0.33
SDCBP-208ENST00000520228 TRIM41Q8WV44 630 aa17.12■□□□□ 0.33
SDCBP-208ENST00000520228 RGL2O15211 777 aa17.07■□□□□ 0.32
SDCBP-208ENST00000520228 CHRM1P11229 460 aaPredicted RBP17■□□□□ 0.31
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