RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 APEX2Q9UBZ4 518 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 AJAP1Q9UKB5 411 aaPredicted RBP13.69□□□□□ -0.22
VPS52-220ENST00000493674 PADI3Q9ULW8 664 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 MYO6Q9UM54 1294 aa13.69□□□□□ -0.22
VPS52-220ENST00000493674 LUC7L2Q9Y383 392 aaKnown RBP13.69□□□□□ -0.22
VPS52-220ENST00000493674 LACTBL1A8MY62 500 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 ZC3H11AO75152 810 aaKnown RBP eCLIP13.68□□□□□ -0.22
VPS52-220ENST00000493674 LRRN2O75325 713 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 GHRP10912 638 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 SELPP16109 830 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 TNNI1P19237 187 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 CD52P31358 61 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 KRT9P35527 623 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 OSTNP61366 133 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 CETN1Q12798 172 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 PAK2Q13177 524 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 BFSP2Q13515 415 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 GPNMBQ14956 572 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 MEA1Q16626 185 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 LMBRD2Q68DH5 695 aaPredicted RBP13.68□□□□□ -0.22
VPS52-220ENST00000493674 PDXDC1Q6P996 788 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 WDR59Q6PJI9 974 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 LRRC8DQ7L1W4 858 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 NECAB2Q7Z6G3 386 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 MRPL10Q7Z7H8 261 aaKnown RBP13.68□□□□□ -0.22
VPS52-220ENST00000493674 CXorf38Q8TB03 319 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 SYN2Q92777 582 aaPredicted RBP13.68□□□□□ -0.22
VPS52-220ENST00000493674 TRIM44Q96DX7 344 aaPredicted RBP13.68□□□□□ -0.22
VPS52-220ENST00000493674 PCMTD1Q96MG8 357 aaPredicted RBP13.68□□□□□ -0.22
VPS52-220ENST00000493674 ZNF830Q96NB3 372 aaPredicted RBP13.68□□□□□ -0.22
VPS52-220ENST00000493674 ACAP3Q96P50 834 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 TSPAN18Q96SJ8 248 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 HTATIP2Q9BUP3 242 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 CCDC94Q9BW85 323 aaPredicted RBP13.68□□□□□ -0.22
VPS52-220ENST00000493674 SNTG2Q9NY99 539 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 CNTN3Q9P232 1028 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 PLAGL2Q9UPG8 496 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 ZKSCAN5Q9Y2L8 839 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 DERAQ9Y315 318 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 C2CD2Q9Y426 696 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 IPPQ9Y573 584 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 FHOD1Q9Y613 1164 aa13.68□□□□□ -0.22
VPS52-220ENST00000493674 RBAK-RBAKDNI3L0D1 243 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 TLR3O15455 904 aaKnown RBP13.67□□□□□ -0.22
VPS52-220ENST00000493674 MGEA5O60502 916 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 ZNF623O75123 536 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 RECQL4O94761 1208 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 HLA-DRAP01903 254 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 NFICP08651 508 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 KCNJ6P48051 423 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 POLR2FP61218 127 aaKnown RBP13.67□□□□□ -0.22
VPS52-220ENST00000493674 CDK17Q00537 523 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 FAAP100Q0VG06 881 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 ZBTB6Q15916 424 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 E4F1Q66K89 784 aaPredicted RBP13.67□□□□□ -0.22
VPS52-220ENST00000493674 IQCEQ6IPM2 695 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 PHLDB3Q6NSJ2 640 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 OR8K1Q8NGG5 319 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 CPLX3Q8WVH0 158 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 MTMR12Q9C0I1 747 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 NUCKS1Q9H1E3 243 aaKnown RBP13.67□□□□□ -0.22
VPS52-220ENST00000493674 RAB20Q9NX57 234 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 TBX21Q9UL17 535 aa13.67□□□□□ -0.22
VPS52-220ENST00000493674 COL4A6Q14031 1691 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 PQBP1O60828 265 aaKnown RBP13.66□□□□□ -0.22
VPS52-220ENST00000493674 KCNE1P15382 129 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 RAB27AP51159 221 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 TLE2Q04725 743 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 DUOXA2Q1HG44 320 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 TRIM60Q495X7 471 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 SMYD5Q6GMV2 418 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 TWF2Q6IBS0 349 aaKnown RBP13.66□□□□□ -0.22
VPS52-220ENST00000493674 JADE1Q6IE81 842 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 GJB7Q6PEY0 223 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 TRAPPC11Q7Z392 1133 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 ARHGEF19Q8IW93 802 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 HELQQ8TDG4 1101 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 LINC01599Q8WXQ3 324 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 TRIM6Q9C030 488 aaPredicted RBP13.66□□□□□ -0.22
VPS52-220ENST00000493674 GPR88Q9GZN0 384 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 CXCL16Q9H2A7 254 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 C11orf49Q9H6J7 331 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 FAM105AQ9NUU6 356 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 HES2Q9Y543 173 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 PCDHB2Q9Y5E7 798 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 VWA8A3KMH1 1905 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 PTPRDP23468 1912 aa13.66□□□□□ -0.22
VPS52-220ENST00000493674 LRRC53A6NM62 1247 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 NBNO60934 754 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 ASS1P00966 412 aaKnown RBP13.65□□□□□ -0.22
VPS52-220ENST00000493674 ATF7P17544 494 aaPredicted RBP13.65□□□□□ -0.22
VPS52-220ENST00000493674 PIK3CAP42336 1068 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 ATN1P54259 1190 aaPredicted RBP13.65□□□□□ -0.22
VPS52-220ENST00000493674 GCNT1Q02742 428 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 NFX1Q12986 1120 aaKnown RBP13.65□□□□□ -0.22
VPS52-220ENST00000493674 NCOA4Q13772 614 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 TMEM132DQ14C87 1099 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 PLEKHG4Q58EX7 1191 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 HGSNATQ68CP4 663 aa13.65□□□□□ -0.22
VPS52-220ENST00000493674 SCARA3Q6AZY7 606 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms