RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C EMP46Q12396 444 aa2.06□□□□□ -2.08
RUB1YDR139C SCM4P32564 187 aa2.05□□□□□ -2.08
RUB1YDR139C YOR062CP36025 268 aa2.05□□□□□ -2.08
RUB1YDR139C NRG2P38082 220 aa2.05□□□□□ -2.08
RUB1YDR139C RSM10Q03201 203 aa2.05□□□□□ -2.08
RUB1YDR139C KAP95Q06142 861 aaKnown RBP2.05□□□□□ -2.08
RUB1YDR139C BTS1Q12051 335 aa2.05□□□□□ -2.08
RUB1YDR139C RRP36Q12481 300 aaPredicted RBP2.05□□□□□ -2.08
RUB1YDR139C CCA1P21269 546 aa2.04□□□□□ -2.08
RUB1YDR139C JEN1P36035 616 aa2.04□□□□□ -2.08
RUB1YDR139C RCN1P36054 211 aa2.04□□□□□ -2.08
RUB1YDR139C PRS4P38063 326 aaPredicted RBP2.04□□□□□ -2.08
RUB1YDR139C MRX3P38172 270 aa2.04□□□□□ -2.08
RUB1YDR139C SMB1P40018 196 aaKnown RBP2.04□□□□□ -2.08
RUB1YDR139C GOT1Q03554 138 aa2.04□□□□□ -2.08
RUB1YDR139C YKR104WP0CE69 306 aa2.03□□□□□ -2.08
RUB1YDR139C RNA15P25299 296 aaPredicted RBP2.03□□□□□ -2.08
RUB1YDR139C SKI2P35207 1287 aaKnown RBP RIP-Chip data2.03□□□□□ -2.08not detected
RUB1YDR139C COS8P38723 381 aa2.03□□□□□ -2.08
RUB1YDR139C YER189WP40104 122 aa2.03□□□□□ -2.08
RUB1YDR139C SNX4P47057 423 aa2.03□□□□□ -2.08
RUB1YDR139C MRH4P53166 561 aa2.03□□□□□ -2.08
RUB1YDR139C YGL034CP53186 121 aa2.03□□□□□ -2.08
RUB1YDR139C YPR098CQ06089 161 aa2.03□□□□□ -2.08
RUB1YDR139C YLR179CQ06252 201 aaKnown RBP2.03□□□□□ -2.08
RUB1YDR139C RRP40Q08285 240 aaKnown RBP2.03□□□□□ -2.08
RUB1YDR139C SYC1Q08553 188 aaPredicted RBP2.03□□□□□ -2.08
RUB1YDR139C BBP1Q12365 385 aa2.03□□□□□ -2.08
RUB1YDR139C SWI1P09547 1314 aa2.02□□□□□ -2.09
RUB1YDR139C MSF1P08425 469 aa2.02□□□□□ -2.09
RUB1YDR139C PUT1P09368 476 aa2.02□□□□□ -2.09
RUB1YDR139C RSR1P13856 272 aa2.02□□□□□ -2.09
RUB1YDR139C YCR102CP25608 368 aa2.02□□□□□ -2.09
RUB1YDR139C HOM6P31116 359 aaKnown RBP2.02□□□□□ -2.09
RUB1YDR139C SGE1P33335 543 aa2.02□□□□□ -2.09
RUB1YDR139C FZO1P38297 855 aa2.02□□□□□ -2.09
RUB1YDR139C YHB1P39676 399 aaKnown RBP2.02□□□□□ -2.09
RUB1YDR139C THO1P40040 218 aaKnown RBP2.02□□□□□ -2.09
RUB1YDR139C SNZ3P43545 298 aa2.02□□□□□ -2.09
RUB1YDR139C DCR2Q05924 578 aa2.02□□□□□ -2.09
RUB1YDR139C SDO1Q07953 250 aaKnown RBP2.02□□□□□ -2.09
RUB1YDR139C COQ10Q08058 207 aa2.02□□□□□ -2.09
RUB1YDR139C FKS1P38631 1876 aaKnown RBP2.01□□□□□ -2.09
RUB1YDR139C YLR462WO13556 202 aa2.01□□□□□ -2.09
RUB1YDR139C EHD3P28817 500 aa2.01□□□□□ -2.09
RUB1YDR139C MRPL39P36533 70 aa2.01□□□□□ -2.09
RUB1YDR139C BIG1P38813 335 aa2.01□□□□□ -2.09
RUB1YDR139C YEL075CP39972 122 aa2.01□□□□□ -2.09
RUB1YDR139C ARC15P40518 154 aaRIP-Chip data2.01□□□□□ -2.09not detected
RUB1YDR139C GLG2P47011 380 aa2.01□□□□□ -2.09
RUB1YDR139C YJL027CP47063 138 aaPredicted RBP2.01□□□□□ -2.09
RUB1YDR139C USE1P53146 245 aa2.01□□□□□ -2.09
RUB1YDR139C SPG4Q04438 115 aa2.01□□□□□ -2.09
RUB1YDR139C YOL107WQ12239 342 aa2.01□□□□□ -2.09
RUB1YDR139C MHT1Q12525 324 aa2.01□□□□□ -2.09
RUB1YDR139C YHR086W-AQ3E746 53 aa2.01□□□□□ -2.09
RUB1YDR139C GOS1P38736 223 aa2□□□□□ -2.09
RUB1YDR139C CTF19Q02732 369 aa2□□□□□ -2.09
RUB1YDR139C CSM4Q08955 156 aa2□□□□□ -2.09
RUB1YDR139C DOA4P32571 926 aa1.99□□□□□ -2.09
RUB1YDR139C YUH1P35127 236 aa1.99□□□□□ -2.09
RUB1YDR139C YBR096WP38256 230 aa1.99□□□□□ -2.09
RUB1YDR139C FCY21P40039 528 aa1.99□□□□□ -2.09
RUB1YDR139C SNZ2P53824 298 aa1.99□□□□□ -2.09
RUB1YDR139C YMR279CQ03263 540 aa1.99□□□□□ -2.09
RUB1YDR139C FAR8Q05040 523 aa1.99□□□□□ -2.09
RUB1YDR139C RRS1Q08746 203 aaKnown RBP1.99□□□□□ -2.09
RUB1YDR139C SNU23Q12368 194 aaPredicted RBP1.99□□□□□ -2.09
RUB1YDR139C Q0255P03881 472 aa1.98□□□□□ -2.09
RUB1YDR139C BAT2P47176 376 aaKnown RBP1.98□□□□□ -2.09
RUB1YDR139C YGR026WP53217 278 aa1.98□□□□□ -2.09
RUB1YDR139C PRM15Q03262 622 aa1.98□□□□□ -2.09
RUB1YDR139C RRT8Q08219 342 aa1.98□□□□□ -2.09
RUB1YDR139C YOR186WQ08560 144 aa1.98□□□□□ -2.09
RUB1YDR139C YCT1Q12235 531 aa1.98□□□□□ -2.09
RUB1YDR139C INO80P53115 1489 aa1.97□□□□□ -2.09
RUB1YDR139C YHR032W-AP0C5N6 59 aa1.97□□□□□ -2.09
RUB1YDR139C ERG24P32462 438 aaKnown RBP1.97□□□□□ -2.09
RUB1YDR139C MSA2P36157 363 aa1.97□□□□□ -2.09
RUB1YDR139C YHR125WP38831 101 aa1.97□□□□□ -2.09
RUB1YDR139C BFR1P38934 470 aaKnown RBP RIP-Chip data1.97□□□□□ -2.09not detected
RUB1YDR139C DAD3P69850 94 aa1.97□□□□□ -2.09
RUB1YDR139C RHO3Q00245 231 aaKnown RBP1.97□□□□□ -2.09
RUB1YDR139C MSH5Q12175 901 aa1.97□□□□□ -2.09
RUB1YDR139C YOR029WQ12243 111 aa1.97□□□□□ -2.09
RUB1YDR139C SMD3P43321 101 aaKnown RBP1.96□□□□□ -2.1
RUB1YDR139C RMR1P53060 241 aa1.96□□□□□ -2.1
RUB1YDR139C YGL159WP53110 370 aa1.96□□□□□ -2.1
RUB1YDR139C LAP3Q01532 483 aaKnown RBP RIP-Chip data1.96□□□□□ -2.1not detected
RUB1YDR139C YLR030WQ07967 263 aa1.96□□□□□ -2.1
RUB1YDR139C AKR2Q12013 749 aa1.96□□□□□ -2.1
RUB1YDR139C COX5AP00424 153 aa1.95□□□□□ -2.1
RUB1YDR139C ADH3P07246 375 aaKnown RBP1.95□□□□□ -2.1
RUB1YDR139C RPT5P33297 434 aaKnown RBP1.95□□□□□ -2.1
RUB1YDR139C YHR127WP38833 243 aaKnown RBP1.95□□□□□ -2.1
RUB1YDR139C BNA6P43619 295 aa1.95□□□□□ -2.1
RUB1YDR139C GTR2P53290 341 aa1.95□□□□□ -2.1
RUB1YDR139C MRPL50P53724 139 aa1.95□□□□□ -2.1
RUB1YDR139C INM2Q05533 292 aa1.95□□□□□ -2.1
RUB1YDR139C YPR172WQ06608 200 aa1.95□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 63.4 ms