RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 KRT37O76014 449 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 MAGEA4P43358 317 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 CASP5P51878 434 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC12A3P55017 1021 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 POLE2P56282 527 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ATG16L1Q676U5 607 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 PAXIP1Q6ZW49 1069 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 YTHDF3Q7Z739 585 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ZC3H18Q86VM9 953 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 TRIM50Q86XT4 487 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ATG4AQ8WYN0 398 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 FAF2Q96CS3 445 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 SH3GL2Q99962 352 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 ALG13Q9NP73 1137 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 HERC5Q9UII4 1024 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 NQO1P15559 274 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 TBXAS1P24557 533 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 PRKCIP41743 596 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 IFI35P80217 286 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 OR6B2Q6IFH4 312 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 NSMCE1Q8WV22 266 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 TSC22D3Q99576 134 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 CDC42EP4Q9H3Q1 356 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 UNC45AQ9H3U1 944 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 BATF3Q9NR55 127 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 STK32BQ9NY57 414 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 SEPT10Q9P0V9 454 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 SALL4Q9UJQ4 1053 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 COMMD10Q9Y6G5 202 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 LTN1O94822 1766 aa8.93□□□□□ -0.98
LIMCH1-216ENST00000512820 A6NJR5 290 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 PRPSAP2O60256 369 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 SHOX2O60902 331 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 GHRP10912 638 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 DCAF15Q66K64 600 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 HGSNATQ68CP4 663 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 AGGF1Q8N302 714 aaeCLIP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 PRPF38AQ8NAV1 312 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 RAB3IL1Q8TBN0 382 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 RIT2Q99578 217 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 TMEM8AQ9HCN3 771 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 ADAMTS3O15072 1205 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 GSTA1P08263 222 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 RALAP11233 206 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 HIF1AQ16665 826 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC30A10Q6XR72 485 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 SEPT12Q8IYM1 358 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 CYP2W1Q8TAV3 490 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 CBWD1Q9BRT8 395 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 TIPINQ9BVW5 301 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 OSBPL1AQ9BXW6 950 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 POLR3FQ9H1D9 316 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 PCSK1NQ9UHG2 260 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 BCAP29Q9UHQ4 241 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 CNOT7Q9UIV1 285 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 SPATA31A5Q5VU36 1347 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 SPATA31A7Q8IWB4 1347 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 GOLGA8RI6L899 631 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 ASAP2O43150 1006 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 TLR2O60603 784 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 LPXNO60711 386 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 UBOX5O94941 541 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 ZWINTO95229 277 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 LCA5LO95447 670 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 ZBED1O96006 694 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 SRGAP2CP0DJJ0 459 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 RPL21P46778 160 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 ACAD10Q6JQN1 1059 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 LONP2Q86WA8 852 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 RCOR2Q8IZ40 523 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 ARHGEF26Q96DR7 871 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 CYTH2Q99418 400 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 MXRA8Q9BRK3 442 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 PI4K2AQ9BTU6 479 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 RBAKQ9NYW8 714 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 AGO2Q9UKV8 859 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 FAM86B1E9PN63 330 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 FAM86B2P0C5J1 330 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 IL1R1P14778 569 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 SHMT1P34896 483 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 KCNA1Q09470 495 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 ECM1Q16610 540 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 KCTD19Q17RG1 926 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 CRLF3Q8IUI8 442 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 FUKQ8N0W3 1084 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 PCDHB2Q9Y5E7 798 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 PCDHA10Q9Y5I2 948 aa8.92□□□□□ -0.98
LIMCH1-216ENST00000512820 BTNL10A8MVZ5 291 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 RBAK-RBAKDNI3L0D1 243 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 RIPK2O43353 540 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 GZMAP12544 262 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 CENPCQ03188 943 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 DNAJC3Q13217 504 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 PSMD6Q15008 389 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 CDO1Q16878 200 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 STRIP1Q5VSL9 837 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 PLA2G4FQ68DD2 849 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 NXNQ6DKJ4 435 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 C11orf63Q6NUN7 778 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 RHPN2Q8IUC4 686 aa8.91□□□□□ -0.98
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