RNA–Protein interactions for RNA: YDR171W

HSP42, Transcript of Small heat shock protein (sHSP) with chaperone activity, yeast

Gene HSP42, Length 1,128 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
HSP42	YDR171W	YJL068C	P40363	299 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	FMC1	P40491	155 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	UTP25	P40498	721 aa	Known RBP	3.77	□□□□□ -1.81
HSP42	YDR171W	RMD8	P43620	662 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	SNN1	P48232	102 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	TIM13	P53299	105 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	RHO4	Q00246	291 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	EGD1	Q02642	157 aa	Known RBP	3.77	□□□□□ -1.81
HSP42	YDR171W	VBA1	Q04301	562 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	IPK1	Q06667	281 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	YPD1	Q07688	167 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	ATG41	Q12048	136 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	RKM5	Q12367	367 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	VMA9	Q3E7B6	73 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	YOS9	Q99220	542 aa		3.77	□□□□□ -1.81
HSP42	YDR171W	YPR096C	O13587	100 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	COX3	P00420	269 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	RPL25	P04456	142 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	CBP6	P07253	162 aa	Predicted RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	YFR010W-A	P0C5N0	62 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	PRP2	P20095	876 aa	Predicted RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	SEC62	P21825	274 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	ELO2	P25358	347 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	ITR1	P30605	584 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	PTR2	P32901	601 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	SRY1	P36007	326 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	PEX32	P38292	413 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	RRP3	P38712	501 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	LRP1	P38801	184 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	GCV3	P39726	170 aa	Predicted RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	YEL057C	P39983	233 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	LSM4	P40070	187 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	YIR035C	P40579	254 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	PRM10	P42946	383 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	GNA1	P43577	159 aa	Predicted RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	TAD2	P47058	250 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	MCM22	P47167	239 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	TIS11	P47977	285 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	SDT1	P53078	280 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	YGL159W	P53110	370 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	ERV14	P53173	138 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	SAM50	P53969	484 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	ERV25	P54837	211 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	TRM44	Q02648	567 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	SPG3	Q04398	127 aa	Predicted RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	YPR127W	Q06494	345 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	RRP40	Q08285	240 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	YPL245W	Q12179	454 aa	Known RBP	3.76	□□□□□ -1.81
HSP42	YDR171W	RDI1	Q12434	202 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	PCL9	Q12477	304 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	MHT1	Q12525	324 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	YIL002W-A	Q3E7Z5	69 aa		3.76	□□□□□ -1.81
HSP42	YDR171W	CCH1	P50077	2039 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	PUT1	P09368	476 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	MER1	P16523	270 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	GLK1	P17709	500 aa	Known RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	PET9	P18239	318 aa	Known RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	FUR1	P18562	216 aa	Known RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	ZRC1	P20107	442 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	EXG1	P23776	448 aa	Known RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	DCC1	P25559	380 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	MRP17	P28778	131 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	TKL2	P33315	681 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	ECM15	P35195	104 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	SHE1	P38200	338 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	HTD2	P38790	280 aa	Known RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	YHR122W	P38829	231 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	YHR210C	P38893	341 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	NSE4	P43124	402 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	YJR141W	P47172	347 aa	Predicted RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	DOC1	P53068	250 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	SYF2	P53277	215 aa	Predicted RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	OKP1	P53298	406 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	NRK1	P53915	240 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	OCA2	P53949	197 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	OAZ1	Q02803	292 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	GIP3	Q03016	1276 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	MET31	Q03081	177 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	YMR321C	Q04898	105 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	YPR091C	Q06833	770 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	SDO1	Q07953	250 aa	Known RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	PLB3	Q08108	686 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	BRX1	Q08235	291 aa	Known RBP	3.75	□□□□□ -1.81
HSP42	YDR171W	BTS1	Q12051	335 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	PER33	Q12144	273 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	PRM4	Q12498	284 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	YLR099W-A	Q3E798	87 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	FSH3	Q99369	266 aa		3.75	□□□□□ -1.81
HSP42	YDR171W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.74	□□□□□ -1.81	not detected
HSP42	YDR171W	RPS18A	P0CX55	146 aa	Known RBP	3.74	□□□□□ -1.81
HSP42	YDR171W	RPS18B	P0CX56	146 aa	Predicted RBP	3.74	□□□□□ -1.81
HSP42	YDR171W	HOM3	P10869	527 aa		3.74	□□□□□ -1.81
HSP42	YDR171W	NAM2	P11325	894 aa		3.74	□□□□□ -1.81
HSP42	YDR171W	REV1	P12689	985 aa		3.74	□□□□□ -1.81
HSP42	YDR171W	MRPL44	P19956	98 aa		3.74	□□□□□ -1.81
HSP42	YDR171W	IFM1	P25038	676 aa		3.74	□□□□□ -1.81
HSP42	YDR171W	SLM5	P25345	492 aa	Known RBP	3.74	□□□□□ -1.81
HSP42	YDR171W	SUA5	P32579	426 aa		3.74	□□□□□ -1.81
HSP42	YDR171W	TIP20	P33891	701 aa		3.74	□□□□□ -1.81
HSP42	YDR171W	PXA2	P34230	853 aa		3.74	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms