RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C IMP1P28627 190 aa3.49□□□□□ -1.85
NPL4YBR170C NTF2P33331 125 aaKnown RBP3.49□□□□□ -1.85
NPL4YBR170C YHL049CP38722 271 aa3.49□□□□□ -1.85
NPL4YBR170C PRE6P40303 254 aaKnown RBP3.49□□□□□ -1.85
NPL4YBR170C MIC26P50087 233 aa3.49□□□□□ -1.85
NPL4YBR170C LIF1P53150 421 aa3.49□□□□□ -1.85
NPL4YBR170C UTP15Q04305 513 aaKnown RBP3.49□□□□□ -1.85
NPL4YBR170C ARC18Q05933 178 aaKnown RBP3.49□□□□□ -1.85
NPL4YBR170C ATG17Q06410 417 aa3.49□□□□□ -1.85
NPL4YBR170C YAL063C-AQ3E791 96 aa3.49□□□□□ -1.85
NPL4YBR170C SMP1P38128 452 aa3.48□□□□□ -1.85
NPL4YBR170C PGU1P47180 361 aa3.48□□□□□ -1.85
NPL4YBR170C PRP24P49960 444 aaKnown RBP3.48□□□□□ -1.85
NPL4YBR170C RHO3Q00245 231 aaKnown RBP3.48□□□□□ -1.85
NPL4YBR170C YMR114CQ04471 368 aaKnown RBP3.48□□□□□ -1.85
NPL4YBR170C RAD9P14737 1309 aa3.48□□□□□ -1.85
NPL4YBR170C SPS19P32573 292 aaKnown RBP3.47□□□□□ -1.85
NPL4YBR170C POP8P38208 133 aa3.47□□□□□ -1.85
NPL4YBR170C YIL012WP40551 113 aa3.47□□□□□ -1.85
NPL4YBR170C SNZ3P43545 298 aa3.47□□□□□ -1.85
NPL4YBR170C MRS2Q01926 470 aa3.47□□□□□ -1.85
NPL4YBR170C PEX10Q05568 337 aa3.47□□□□□ -1.85
NPL4YBR170C RAX2Q12465 1220 aa3.47□□□□□ -1.85
NPL4YBR170C HTB1P02293 131 aaKnown RBP3.47□□□□□ -1.85
NPL4YBR170C HTB2P02294 131 aa3.47□□□□□ -1.85
NPL4YBR170C COX4P04037 155 aa3.47□□□□□ -1.85
NPL4YBR170C RPL27AP0C2H6 136 aaKnown RBP3.47□□□□□ -1.85
NPL4YBR170C RPL27BP0C2H7 136 aaKnown RBP3.47□□□□□ -1.85
NPL4YBR170C YKR104WP0CE69 306 aa3.47□□□□□ -1.85
NPL4YBR170C IDH1P28834 360 aaKnown RBP RIP-Chip data3.47□□□□□ -1.85not detected
NPL4YBR170C SSO1P32867 290 aa3.47□□□□□ -1.85
NPL4YBR170C GDH2P33327 1092 aaKnown RBP3.47□□□□□ -1.85
NPL4YBR170C SGE1P33335 543 aa3.47□□□□□ -1.85
NPL4YBR170C PRX1P34227 261 aaKnown RBP3.47□□□□□ -1.85
NPL4YBR170C GPI18P38211 433 aa3.47□□□□□ -1.85
NPL4YBR170C MGA1P53050 456 aa3.47□□□□□ -1.85
NPL4YBR170C SNZ2P53824 298 aa3.47□□□□□ -1.85
NPL4YBR170C ABP140Q08641 628 aaKnown RBP3.47□□□□□ -1.85
NPL4YBR170C YLR126CQ12288 251 aa3.47□□□□□ -1.85
NPL4YBR170C DCN1Q12395 269 aa3.47□□□□□ -1.85
NPL4YBR170C YCL012CQ8J0M4 134 aa3.47□□□□□ -1.85
NPL4YBR170C RFA3P26755 122 aaKnown RBP3.46□□□□□ -1.86
NPL4YBR170C CAT2P32796 670 aaKnown RBP3.46□□□□□ -1.86
NPL4YBR170C ZRT3P34240 503 aa3.46□□□□□ -1.86
NPL4YBR170C YHR127WP38833 243 aaKnown RBP3.46□□□□□ -1.86
NPL4YBR170C TRM9P49957 279 aa3.46□□□□□ -1.86
NPL4YBR170C NIF3P53081 288 aa3.46□□□□□ -1.86
NPL4YBR170C ALG13P53178 202 aa3.46□□□□□ -1.86
NPL4YBR170C SPG4Q04438 115 aa3.46□□□□□ -1.86
NPL4YBR170C YDR222WQ04925 415 aa3.46□□□□□ -1.86
NPL4YBR170C PAL1Q05518 499 aaKnown RBP3.46□□□□□ -1.86
NPL4YBR170C SMD2Q06217 110 aaKnown RBP3.46□□□□□ -1.86
NPL4YBR170C DXO1Q06349 442 aa3.46□□□□□ -1.86
NPL4YBR170C YOL029CQ08187 201 aa3.46□□□□□ -1.86
NPL4YBR170C BCY1P07278 416 aaKnown RBP3.45□□□□□ -1.86
NPL4YBR170C EPT1P22140 391 aa3.45□□□□□ -1.86
NPL4YBR170C ADE1P27616 306 aa3.45□□□□□ -1.86
NPL4YBR170C ARC19P33204 171 aaKnown RBP3.45□□□□□ -1.86
NPL4YBR170C IKI1P38874 309 aa3.45□□□□□ -1.86
NPL4YBR170C CPR7P47103 393 aa3.45□□□□□ -1.86
NPL4YBR170C ADO1P47143 340 aaKnown RBP3.45□□□□□ -1.86
NPL4YBR170C NOP19P53317 196 aaPredicted RBP3.45□□□□□ -1.86
NPL4YBR170C ACT1P60010 375 aaKnown RBP3.45□□□□□ -1.86
NPL4YBR170C YTH1Q06102 208 aaPredicted RBP3.45□□□□□ -1.86
NPL4YBR170C YDL144CQ07589 356 aa3.45□□□□□ -1.86
NPL4YBR170C JLP1Q12358 412 aa3.45□□□□□ -1.86
NPL4YBR170C RPL28P02406 149 aaKnown RBP3.44□□□□□ -1.86
NPL4YBR170C SPT3P06844 337 aa3.44□□□□□ -1.86
NPL4YBR170C DPB2P24482 689 aaPredicted RBP3.44□□□□□ -1.86
NPL4YBR170C RME1P32338 300 aaKnown RBP3.44□□□□□ -1.86
NPL4YBR170C MRPL27P36526 146 aaPredicted RBP3.44□□□□□ -1.86
NPL4YBR170C HMT1P38074 348 aa3.44□□□□□ -1.86
NPL4YBR170C RRT13P40042 185 aa3.44□□□□□ -1.86
NPL4YBR170C YJR149WP47177 404 aa3.44□□□□□ -1.86
NPL4YBR170C ECM19Q06011 112 aa3.44□□□□□ -1.86
NPL4YBR170C SEI1Q06058 285 aa3.44□□□□□ -1.86
NPL4YBR170C YPR147CQ06522 304 aaKnown RBP3.44□□□□□ -1.86
NPL4YBR170C SIR4P11978 1358 aa3.44□□□□□ -1.86
NPL4YBR170C MIC19P43594 170 aa3.44□□□□□ -1.86
NPL4YBR170C MCM22P47167 239 aa3.44□□□□□ -1.86
NPL4YBR170C NSA1P53136 463 aaPredicted RBP3.44□□□□□ -1.86
NPL4YBR170C YGL039WP53183 348 aaKnown RBP3.44□□□□□ -1.86
NPL4YBR170C GET1P53192 235 aa3.44□□□□□ -1.86
NPL4YBR170C AAH1P53909 347 aa3.44□□□□□ -1.86
NPL4YBR170C DFM1Q12743 341 aaKnown RBP3.44□□□□□ -1.86
NPL4YBR170C YAL067W-AQ8TGK6 75 aa3.44□□□□□ -1.86
NPL4YBR170C QCR7P00128 127 aa3.43□□□□□ -1.86
NPL4YBR170C SNA3P14359 133 aa3.43□□□□□ -1.86
NPL4YBR170C DRE2P36152 348 aa3.43□□□□□ -1.86
NPL4YBR170C EDC2P40023 145 aaPredicted RBP3.43□□□□□ -1.86
NPL4YBR170C AVT6P40074 448 aa3.43□□□□□ -1.86
NPL4YBR170C NUP57P48837 541 aa3.43□□□□□ -1.86
NPL4YBR170C SLX9P53251 210 aaPredicted RBP3.43□□□□□ -1.86
NPL4YBR170C RRP40Q08285 240 aaKnown RBP3.43□□□□□ -1.86
NPL4YBR170C TIR4Q12218 487 aaPredicted RBP3.43□□□□□ -1.86
NPL4YBR170C YOL085CQ99345 113 aa3.43□□□□□ -1.86
NPL4YBR170C COS2P0CX12 379 aa3.42□□□□□ -1.86
NPL4YBR170C COS3P0CX13 379 aa3.42□□□□□ -1.86
NPL4YBR170C PHO80P20052 293 aa3.42□□□□□ -1.86
NPL4YBR170C SLX1P38324 304 aa3.42□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 51.6 ms