RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 SPATA4Q8NEY3 305 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 KIFAP3Q92845 792 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 ATP6V0A1Q93050 837 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 CAPZA3Q96KX2 299 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 FRMD6Q96NE9 622 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 ACAD9Q9H845 621 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 PKD2L1Q9P0L9 805 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 APEX2Q9UBZ4 518 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 NENFQ9UMX5 172 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 AFG3L2Q9Y4W6 797 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 RIPK3Q9Y572 518 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 AK5Q9Y6K8 562 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 PDE2AO00408 941 aaPredicted RBP7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 ZNF185O15231 689 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 BUB1O43683 1085 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 PALMO75781 387 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 CCNE2O96020 404 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 LMNB1P20700 586 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 HMGCS2P54868 508 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 DGKZQ13574 1117 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 SMC1AQ14683 1233 aaKnown RBP7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 TERF2Q15554 542 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 GNPTABQ3T906 1256 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 XKR9Q5GH70 373 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 KSR1Q8IVT5 923 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 ANKRD13CQ8N6S4 541 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 CHST13Q8NET6 341 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 DNERQ8NFT8 737 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 ALKBH8Q96BT7 664 aaKnown RBP7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 VIPAS39Q9H9C1 493 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 DNAJC12Q9UKB3 198 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 PHIPQ8WWQ0 1821 aa7.86□□□□□ -1.15
HERPUD1-209ENST00000564678 HMGB1P1B2RPK0 211 aaPredicted RBP7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 F8VZ95 297 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 H0YCG3 227 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 PSAPP07602 524 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 H2AFZP0C0S5 128 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 KCNA2P16389 499 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 VAMP7P51809 220 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 PEX3P56589 373 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 MYL7Q01449 175 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 DRAP1Q14919 205 aaPredicted RBP7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 TMEM132BQ14DG7 1078 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 CBWD6Q4V339 395 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 CBWD3Q5JTY5 395 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 CBWD5Q5RIA9 395 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 DESI1Q6ICB0 168 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 H2AFVQ71UI9 128 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 KIAA0907Q7Z7F0 614 aaPredicted RBP7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 USP37Q86T82 979 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 MCPH1Q8NEM0 835 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 SLC30A5Q8TAD4 765 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 LMO3Q8TAP4 145 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 COG1Q8WTW3 980 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 KCNN1Q92952 543 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 CITED4Q96RK1 184 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 CYP39A1Q9NYL5 469 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 HSPBP1Q9NZL4 362 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 CNTN3Q9P232 1028 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 SFMBT1Q9UHJ3 866 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 COL11A1P12107 1806 aaPredicted RBP7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 ZNF541Q9H0D2 1346 aa7.85□□□□□ -1.15
HERPUD1-209ENST00000564678 SPATA31C2B4DYI2 1134 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 BACH1O14867 736 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 DGAT1O75907 488 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 ICAM3P32942 547 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 DMTNQ08495 405 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 DMP1Q13316 513 aaPredicted RBP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 UGCGQ16739 394 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 SWT1Q5T5J6 900 aaKnown RBP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 NFRKBQ6P4R8 1299 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 CCNI2Q6ZMN8 369 aaPredicted RBP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 ANO5Q75V66 913 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 MAEAQ7L5Y9 396 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 MAP4K3Q8IVH8 894 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 SYCE1Q8N0S2 351 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.84□□□□□ -1.151e-12■■■□□ 16.3
HERPUD1-209ENST00000564678 WNK4Q96J92 1243 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 PBKQ96KB5 322 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 INTS2Q9H0H0 1204 aaKnown RBP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 IKZF4Q9H2S9 585 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 SLC9A2Q9UBY0 812 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 TBX20Q9UMR3 447 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 WDR81Q562E7 1941 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 KIAA1217Q5T5P2 1943 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 DDX3XO00571 662 aaKnown RBP eCLIP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 KLF4O43474 513 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 GALR2O43603 387 aaPredicted RBP7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 CNGA1P29973 690 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 NPTX2P47972 431 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 CASP8Q14790 479 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 KIF22Q14807 665 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 RPS6KA1Q15418 735 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 FAM102BQ5T8I3 360 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 SLFN11Q7Z7L1 901 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 TMEM161BQ8NDZ6 487 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 ADAM32Q8TC27 787 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 TRPM4Q8TD43 1214 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 TAF4BQ92750 862 aa7.84□□□□□ -1.15
HERPUD1-209ENST00000564678 PKNOX2Q96KN3 472 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms