RNA–Protein interactions for RNA: ENST00000391814.5

SHANK1-204, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHANK1, Length 6,622 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-204ENST00000391814 DOK7Q18PE1 504 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 KNOP1Q1ED39 458 aaKnown RBP17.05■□□□□ 0.32
SHANK1-204ENST00000391814 ANO4Q32M45 955 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 FOXR1Q6PIV2 292 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 MMGT1Q8N4V1 131 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 AGPAT1Q99943 283 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 CPSF3Q9UKF6 684 aaKnown RBP17.05■□□□□ 0.32
SHANK1-204ENST00000391814 CALB1P05937 261 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 NLRP11P59045 1033 aaKnown RBP17.05■□□□□ 0.32
SHANK1-204ENST00000391814 GPATCH4Q5T3I0 446 aaKnown RBP17.05■□□□□ 0.32
SHANK1-204ENST00000391814 BARGINQ6ZT62 677 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 TEX12Q9BXU0 123 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 SUGT1Q9Y2Z0 365 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 LAMC3Q9Y6N6 1575 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 CLASP1Q7Z460 1538 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 NPHP3-ACAD11A0A0J9YXS1 232 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 RASGRF1Q13972 1273 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 TXNRD1Q16881 649 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 CCDC81Q6ZN84 652 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 RSRC2Q7L4I2 434 aaKnown RBP17.05■□□□□ 0.32
SHANK1-204ENST00000391814 HOMEZQ8IX15 550 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 ZNF513Q8N8E2 541 aaPredicted RBP17.05■□□□□ 0.32
SHANK1-204ENST00000391814 LY9Q9HBG7 655 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 TMEM260Q9NX78 707 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 LCMT1Q9UIC8 334 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 STK25O00506 426 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 NFIBO00712 420 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 FAM200BP0CF97 657 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 VAMP7P51809 220 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 ALCAMQ13740 583 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 REXO1L1PQ8IX06 675 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.05■□□□□ 0.32
SHANK1-204ENST00000391814 V9GYQ6 96 aa17.05■□□□□ 0.32
SHANK1-204ENST00000391814 ZNF233A6NK53 670 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 ARPP19P56211 112 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 FBXW4P57775 412 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 ATL2Q8NHH9 583 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 ZCWPW1Q9H0M4 648 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 TMBIM4Q9HC24 238 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 CCNL1Q9UK58 526 aaPredicted RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 CDYLQ9Y232 598 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 LZTS3O60299 673 aaPredicted RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 KLHL2O95198 593 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 MAP3K10Q02779 954 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 Q3C1V9 767 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 OTULINQ96BN8 352 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 FAM118BQ9BPY3 351 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 XPO7Q9UIA9 1087 aaKnown RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 PHTF1Q9UMS5 762 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 ATP1A4Q13733 1029 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 ARL13BQ3SXY8 428 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 NCAPG2Q86XI2 1143 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 LARGE2Q8N3Y3 721 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 RBM15Q96T37 977 aaKnown RBP eCLIP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 SARS2Q9NP81 518 aaKnown RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 SEL1LQ9UBV2 794 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 ZNF608Q9ULD9 1512 aaPredicted RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 TMEM247A6NEH6 219 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 HSPA1AP0DMV8 641 aaKnown RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 HSPA1BP0DMV9 641 aaKnown RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 GNA15P30679 374 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 OVGP1Q12889 678 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 CCDC142Q17RM4 750 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 SYDE2Q5VT97 1194 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 DDI1Q8WTU0 396 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 KLF6Q99612 283 aaPredicted RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 PFKFB3Q16875 520 aaPredicted RBP17.04■□□□□ 0.32
SHANK1-204ENST00000391814 TMC5Q6UXY8 1006 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 HPS3Q969F9 1004 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 C9orf72Q96LT7 481 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 MTRQ99707 1265 aa17.04■□□□□ 0.32
SHANK1-204ENST00000391814 PNMA6FA0A0J9YX94 578 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 CACNA2D1P54289 1103 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 PTK7Q13308 1070 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 EPS8L3Q8TE67 593 aaKnown RBP17.03■□□□□ 0.32
SHANK1-204ENST00000391814 SLC7A3Q8WY07 619 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 NEU2Q9Y3R4 380 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 TMCC1O94876 653 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 RPF1Q9H9Y2 349 aaKnown RBP17.03■□□□□ 0.32
SHANK1-204ENST00000391814 CDC25CP30307 473 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 HEATR6Q6AI08 1181 aaKnown RBP17.03■□□□□ 0.32
SHANK1-204ENST00000391814 IL1RL2Q9HB29 575 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 COPG1Q9Y678 874 aaKnown RBP17.03■□□□□ 0.32
SHANK1-204ENST00000391814 STRNO43815 780 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 ITIH2P19823 946 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 PTPN12Q05209 780 aaKnown RBP17.03■□□□□ 0.32
SHANK1-204ENST00000391814 DLGAP5Q15398 846 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 JAMLQ86YT9 394 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 SESN1Q9Y6P5 492 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 CAND2O75155 1236 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 RTN2O75298 545 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 CHI3L2Q15782 390 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 TLK2Q86UE8 772 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 SLC9A2Q9UBY0 812 aa17.03■□□□□ 0.32
SHANK1-204ENST00000391814 GDF11O95390 407 aa17.02■□□□□ 0.32
SHANK1-204ENST00000391814 SRGNP10124 158 aa17.02■□□□□ 0.32
SHANK1-204ENST00000391814 DNAJC3Q13217 504 aa17.02■□□□□ 0.32
SHANK1-204ENST00000391814 RUBCNLQ9H714 662 aa17.02■□□□□ 0.32
SHANK1-204ENST00000391814 HSPA13P48723 471 aa17.02■□□□□ 0.32
SHANK1-204ENST00000391814 TBL3Q12788 808 aaKnown RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms