RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeastyeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DNL4YOR005C GPI11Q06636 219 aa2.32□□□□□ -2.04
DNL4YOR005C CLP1Q08685 445 aaPredicted RBP2.32□□□□□ -2.04
DNL4YOR005C TIM18Q08749 192 aa2.32□□□□□ -2.04
DNL4YOR005C SAM4Q08985 325 aaKnown RBP2.32□□□□□ -2.04
DNL4YOR005C YPL119C-AQ3E751 87 aa2.32□□□□□ -2.04
DNL4YOR005C LAG2Q92325 660 aa2.32□□□□□ -2.04
DNL4YOR005C ADH2P00331 348 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C IPP1P00817 287 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C CDC36P06100 191 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C PET494P07390 489 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C DCC1P25559 380 aa2.31□□□□□ -2.04
DNL4YOR005C ACB1P31787 87 aa2.31□□□□□ -2.04
DNL4YOR005C KRE6P32486 720 aa2.31□□□□□ -2.04
DNL4YOR005C YEF1P32622 495 aa2.31□□□□□ -2.04
DNL4YOR005C ASK1P35734 292 aa2.31□□□□□ -2.04
DNL4YOR005C RIB1P38066 345 aa2.31□□□□□ -2.04
DNL4YOR005C GPX2P38143 162 aa2.31□□□□□ -2.04
DNL4YOR005C MBA1P38300 278 aa2.31□□□□□ -2.04
DNL4YOR005C IPI1P38803 334 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C SLM1P40485 686 aa2.31□□□□□ -2.04
DNL4YOR005C CFD1P40558 293 aa2.31□□□□□ -2.04
DNL4YOR005C SER2P42941 309 aa2.31□□□□□ -2.04
DNL4YOR005C BUD13P46947 266 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C DIE2P50076 525 aa2.31□□□□□ -2.04
DNL4YOR005C NQM1P53228 333 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C OKP1P53298 406 aa2.31□□□□□ -2.04
DNL4YOR005C COS1P53822 381 aa2.31□□□□□ -2.04
DNL4YOR005C TDA7P53882 636 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C ALG11P53954 548 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C DID2P69771 204 aa2.31□□□□□ -2.04
DNL4YOR005C SPR6Q01684 191 aa2.31□□□□□ -2.04
DNL4YOR005C ELP3Q02908 557 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C GTO3Q04806 366 aa2.31□□□□□ -2.04
DNL4YOR005C GAT3Q07928 141 aa2.31□□□□□ -2.04
DNL4YOR005C YNG1Q08465 219 aa2.31□□□□□ -2.04
DNL4YOR005C FEX1Q08913 375 aa2.31□□□□□ -2.04
DNL4YOR005C PST2Q12335 198 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C RPN6Q12377 434 aa2.31□□□□□ -2.04
DNL4YOR005C GTT2Q12390 233 aa2.31□□□□□ -2.04
DNL4YOR005C MHF2Q3E829 80 aa2.31□□□□□ -2.04
DNL4YOR005C MOT1P32333 1867 aa2.31□□□□□ -2.04
DNL4YOR005C UBR2Q07963 1872 aa2.31□□□□□ -2.04
DNL4YOR005C TDH2P00358 332 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C RAD7P06779 565 aa2.31□□□□□ -2.04
DNL4YOR005C YAP1P19880 650 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C ATG22P25568 528 aa2.31□□□□□ -2.04
DNL4YOR005C BUB2P26448 306 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C MEI5P32489 222 aa2.31□□□□□ -2.04
DNL4YOR005C MGM101P32787 269 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C CAF4P36130 643 aa2.31□□□□□ -2.04
DNL4YOR005C YHK8P38776 514 aa2.31□□□□□ -2.04
DNL4YOR005C LSM12P38828 187 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C HAT2P39984 401 aa2.31□□□□□ -2.04
DNL4YOR005C YCH1P42937 148 aa2.31□□□□□ -2.04
DNL4YOR005C YGR210CP42942 411 aa2.31□□□□□ -2.04
DNL4YOR005C QRI1P43123 477 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C YFL040WP43562 540 aa2.31□□□□□ -2.04
DNL4YOR005C RRT5P43607 289 aa2.31□□□□□ -2.04
DNL4YOR005C MRX5P47007 382 aa2.31□□□□□ -2.04
DNL4YOR005C NOP13P53883 403 aaKnown RBP RIP-Chip data2.31□□□□□ -2.04not detected
DNL4YOR005C VAC7P53950 1165 aa2.31□□□□□ -2.04
DNL4YOR005C SNZ1Q03148 297 aa2.31□□□□□ -2.04
DNL4YOR005C MZM1Q03429 123 aaPredicted RBP2.31□□□□□ -2.04
DNL4YOR005C CSN9Q03981 162 aa2.31□□□□□ -2.04
DNL4YOR005C RTT103Q05543 409 aa2.31□□□□□ -2.04
DNL4YOR005C ASR1Q06834 288 aa2.31□□□□□ -2.04
DNL4YOR005C FEX2Q08991 375 aa2.31□□□□□ -2.04
DNL4YOR005C YOR029WQ12243 111 aa2.31□□□□□ -2.04
DNL4YOR005C PNS1Q12412 539 aa2.31□□□□□ -2.04
DNL4YOR005C EFG1Q3E705 233 aaKnown RBP2.31□□□□□ -2.04
DNL4YOR005C YHR213W-AQ8TGT4 77 aa2.31□□□□□ -2.04
DNL4YOR005C NSP1P14907 823 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C RPL24BP24000 155 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C CAM1P29547 415 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C ERG9P29704 444 aa2.3□□□□□ -2.04
DNL4YOR005C MKK1P32490 508 aa2.3□□□□□ -2.04
DNL4YOR005C GLC7P32598 312 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C ARC19P33204 171 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C YNK1P36010 153 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C AIM29P36154 155 aa2.3□□□□□ -2.04
DNL4YOR005C YGR067CP53243 804 aa2.3□□□□□ -2.04
DNL4YOR005C HXT11P54862 567 aa2.3□□□□□ -2.04
DNL4YOR005C NUP116Q02630 1113 aa2.3□□□□□ -2.04
DNL4YOR005C RMI1Q02685 241 aa2.3□□□□□ -2.04
DNL4YOR005C HER2Q03557 464 aa2.3□□□□□ -2.04
DNL4YOR005C GRX8Q05926 109 aa2.3□□□□□ -2.04
DNL4YOR005C BER1Q06688 274 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C SDO1Q07953 250 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C SLF1Q12034 447 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C YDL109CQ12103 647 aa2.3□□□□□ -2.04
DNL4YOR005C YGK3Q12222 375 aaPredicted RBP2.3□□□□□ -2.04
DNL4YOR005C SNU23Q12368 194 aaPredicted RBP2.3□□□□□ -2.04
DNL4YOR005C YOS9Q99220 542 aa2.3□□□□□ -2.04
DNL4YOR005C DET1Q99288 334 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C HSP26P15992 214 aaKnown RBP RIP-Chip data2.3□□□□□ -2.04 RIP-Chip
DNL4YOR005C YSR3P23501 404 aa2.3□□□□□ -2.04
DNL4YOR005C EXG1P23776 448 aaKnown RBP2.3□□□□□ -2.04
DNL4YOR005C MRPL17P36528 281 aa2.3□□□□□ -2.04
DNL4YOR005C PRS4P38063 326 aaPredicted RBP2.3□□□□□ -2.04
DNL4YOR005C MST28P39552 234 aa2.3□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 41.1 ms