RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	YHK8	P38776	514 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	YHR097C	P38809	366 aa	Known RBP	4.07	□□□□□ -1.76
UBI4	YLL039C	SBE22	P38814	852 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	NSG1	P38837	291 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	PCL6	P40038	420 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	PKP1	P40530	394 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	TOS2	P50078	622 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	TPS1	Q00764	495 aa	Known RBP	4.07	□□□□□ -1.76
UBI4	YLL039C	YMR279C	Q03263	540 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	CGI121	Q03705	181 aa	Known RBP	4.07	□□□□□ -1.76
UBI4	YLL039C	SNX41	Q04053	625 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	ARV1	Q06541	321 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	BRX1	Q08235	291 aa	Known RBP	4.07	□□□□□ -1.76
UBI4	YLL039C	YBR298C-A	Q8TGK4	73 aa		4.07	□□□□□ -1.76
UBI4	YLL039C	CDC7	P06243	507 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	YOL163W	P0CF20	169 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	ERG8	P24521	451 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	VMA5	P31412	392 aa	Known RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	SRB6	P32570	121 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	DHR2	P36009	735 aa	Predicted RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.06	□□□□□ -1.76	not detected
UBI4	YLL039C	IKI1	P38874	309 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	YNL208W	P40159	199 aa	Known RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	YNL195C	P40168	261 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	CAK1	P43568	368 aa	Predicted RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	RPE1	P46969	238 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	PGU1	P47180	361 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	GPG1	P53130	126 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	SYF2	P53277	215 aa	Predicted RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	YGR168C	P53293	376 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	MEP3	P53390	489 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	ATG4	P53867	494 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	RHO5	P53879	331 aa	Known RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	PHO92	Q06390	306 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	GSH2	Q08220	491 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	RRG7	Q08774	242 aa	Predicted RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	FRE3	Q08905	711 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	RBD2	Q12270	262 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	DCN1	Q12395	269 aa		4.06	□□□□□ -1.76
UBI4	YLL039C	SEC16	P48415	2195 aa	Known RBP	4.06	□□□□□ -1.76
UBI4	YLL039C	ARG80	P07249	177 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.05	□□□□□ -1.76	not detected
UBI4	YLL039C	ERD2	P18414	219 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	PHO80	P20052	293 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	APA2	P22108	325 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	RPL24B	P24000	155 aa	Known RBP	4.05	□□□□□ -1.76
UBI4	YLL039C	JEN1	P36035	616 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	RRP4	P38792	359 aa	Known RBP	4.05	□□□□□ -1.76
UBI4	YLL039C	YJL193W	P39542	402 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	YER184C	P39961	794 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	YEL068C	P39977	110 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	HIS6	P40545	261 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	QRI1	P43123	477 aa	Known RBP	4.05	□□□□□ -1.76
UBI4	YLL039C	ECO1	P43605	281 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	LOH1	P47055	219 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	PUS4	P48567	403 aa	Known RBP	4.05	□□□□□ -1.76
UBI4	YLL039C	PMT5	P52867	743 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	ACS1	Q01574	713 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	TIM44	Q01852	431 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	EKI1	Q03764	534 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	YMR130W	Q04223	302 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	PLM2	Q04383	521 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	YPD1	Q07688	167 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	CRT10	Q08226	957 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	HNT3	Q08702	217 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	YPL272C	Q08984	517 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	MCP1	Q12106	302 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	PST2	Q12335	198 aa	Known RBP	4.05	□□□□□ -1.76
UBI4	YLL039C	ATP14	Q12349	124 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	SET6	Q12529	373 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	YIL002W-A	Q3E7Z5	69 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	SUS1	Q6WNK7	96 aa		4.05	□□□□□ -1.76
UBI4	YLL039C	DET1	Q99288	334 aa	Known RBP	4.05	□□□□□ -1.76
UBI4	YLL039C	GRX2	P17695	143 aa	Known RBP	4.04	□□□□□ -1.76
UBI4	YLL039C	ERG4	P25340	473 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	RRP7	P25368	297 aa	Predicted RBP	4.04	□□□□□ -1.76
UBI4	YLL039C	YCR100C	P25606	316 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	UBC8	P28263	218 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	PDC2	P32896	925 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	ECM15	P35195	104 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	SRO77	P38163	1010 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	POP8	P38208	133 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	YBR137W	P38276	179 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	MTC4	P38335	694 aa	Known RBP	4.04	□□□□□ -1.76
UBI4	YLL039C	ALP1	P38971	573 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	SSO2	P39926	295 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	YEL057C	P39983	233 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	SPO73	P40031	143 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	PGD1	P40356	397 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	CIN5	P40917	295 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	GPP1	P41277	250 aa	Known RBP	4.04	□□□□□ -1.76
UBI4	YLL039C	YFR054C	P43622	192 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	SSY5	P47002	699 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	BAT2	P47176	376 aa	Known RBP	4.04	□□□□□ -1.76
UBI4	YLL039C	SRB7	P47822	140 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	PRM8	P53174	237 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	BSC5	P53755	489 aa		4.04	□□□□□ -1.76
UBI4	YLL039C	PDR16	P53860	351 aa	Known RBP	4.04	□□□□□ -1.76
UBI4	YLL039C	LSM7	P53905	115 aa	Known RBP	4.04	□□□□□ -1.76
UBI4	YLL039C	YCL001W-A	P87012	153 aa		4.04	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 37.2 ms