RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	YKR015C	P36111	568 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	PFS1	P38872	237 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	YNL208W	P40159	199 aa	Known RBP	4.02	□□□□□ -1.77
CAF16	YFL028C	REE1	P40893	198 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	CDC40	P40968	455 aa	Predicted RBP	4.02	□□□□□ -1.77
CAF16	YFL028C	MEP2	P41948	499 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	BIR1	P47134	954 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	LSG1	P53145	640 aa	Known RBP	4.02	□□□□□ -1.77
CAF16	YFL028C	SHY1	P53266	389 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	CRH1	P53301	507 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	BOR1	P53838	576 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	OSH6	Q02201	448 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	RNY1	Q02933	434 aa	Known RBP	4.02	□□□□□ -1.77
CAF16	YFL028C	YPL113C	Q02961	396 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	YMR209C	Q03648	457 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	APC4	Q04601	652 aa		4.02	□□□□□ -1.77
CAF16	YFL028C	SLF1	Q12034	447 aa	Known RBP	4.02	□□□□□ -1.77
CAF16	YFL028C	HEM4	P06174	275 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	RAD7	P06779	565 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	YKR104W	P0CE69	306 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	RPL23A	P0CX41	137 aa	Known RBP	4.01	□□□□□ -1.77
CAF16	YFL028C	RPL23B	P0CX42	137 aa	Known RBP	4.01	□□□□□ -1.77
CAF16	YFL028C	RPS18A	P0CX55	146 aa	Known RBP	4.01	□□□□□ -1.77
CAF16	YFL028C	RPS18B	P0CX56	146 aa	Predicted RBP	4.01	□□□□□ -1.77
CAF16	YFL028C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	4.01	□□□□□ -1.77	not detected
CAF16	YFL028C	MEK1	P24719	497 aa	Predicted RBP	4.01	□□□□□ -1.77
CAF16	YFL028C	ACB1	P31787	87 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	MRPL37	P36532	105 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	DTR1	P38125	572 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	CYC2	P38909	366 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	TIF34	P40217	347 aa	Known RBP	4.01	□□□□□ -1.77
CAF16	YFL028C	PEP8	P40335	379 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	SNM1	P40993	198 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	CLD1	P53264	445 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	SPP2	Q02521	185 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	YHC1	Q05900	231 aa	Known RBP	4.01	□□□□□ -1.77
CAF16	YFL028C	IRC25	Q07951	179 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	YLR053C	Q12026	108 aa		4.01	□□□□□ -1.77
CAF16	YFL028C	CPA1	P07258	411 aa	Known RBP	4	□□□□□ -1.77
CAF16	YFL028C	POL30	P15873	258 aa	Known RBP	4	□□□□□ -1.77
CAF16	YFL028C	RPB5	P20434	215 aa		4	□□□□□ -1.77
CAF16	YFL028C	YSR3	P23501	404 aa		4	□□□□□ -1.77
CAF16	YFL028C	GPI12	P23797	304 aa		4	□□□□□ -1.77
CAF16	YFL028C	CSM1	P25651	190 aa		4	□□□□□ -1.77
CAF16	YFL028C	RPL5	P26321	297 aa	Known RBP	4	□□□□□ -1.77
CAF16	YFL028C	ITR2	P30606	609 aa		4	□□□□□ -1.77
CAF16	YFL028C	PRP18	P33411	251 aa	Predicted RBP	4	□□□□□ -1.77
CAF16	YFL028C	ECT1	P33412	323 aa		4	□□□□□ -1.77
CAF16	YFL028C	TIP20	P33891	701 aa		4	□□□□□ -1.77
CAF16	YFL028C	PTI1	P39927	425 aa	Predicted RBP	4	□□□□□ -1.77
CAF16	YFL028C	EMC2	P47133	292 aa	Known RBP	4	□□□□□ -1.77
CAF16	YFL028C	BNS1	P50084	137 aa		4	□□□□□ -1.77
CAF16	YFL028C	BOL2	P53082	120 aa		4	□□□□□ -1.77
CAF16	YFL028C	YPL080C	Q02826	108 aa		4	□□□□□ -1.77
CAF16	YFL028C	CSN9	Q03981	162 aa		4	□□□□□ -1.77
CAF16	YFL028C	EMI1	Q04406	187 aa		4	□□□□□ -1.77
CAF16	YFL028C	YLR177W	Q06251	628 aa		4	□□□□□ -1.77
CAF16	YFL028C	PBP4	Q07362	185 aa	Known RBP	4	□□□□□ -1.77
CAF16	YFL028C	VPS68	Q12016	184 aa		4	□□□□□ -1.77
CAF16	YFL028C	SRO7	Q12038	1033 aa		4	□□□□□ -1.77
CAF16	YFL028C	JID1	Q12350	301 aa		4	□□□□□ -1.77
CAF16	YFL028C	GTT2	Q12390	233 aa		4	□□□□□ -1.77
CAF16	YFL028C	HMS1	Q12398	434 aa		4	□□□□□ -1.77
CAF16	YFL028C	STT4	P37297	1900 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	PHO2	P07269	559 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	YBR032W	P38223	100 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	PHO89	P38361	574 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	EFM1	P38732	585 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	DSN1	P40568	576 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	LIA1	P47120	325 aa	Known RBP	3.99	□□□□□ -1.77
CAF16	YFL028C	HCH1	P53834	153 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	YNL260C	P53846	198 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	TRM82	Q03774	444 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	TRM12	Q04235	462 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	FAR8	Q05040	523 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	FDH1	Q08911	376 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	FRE8	Q12209	686 aa		3.99	□□□□□ -1.77
CAF16	YFL028C	RUD3	Q12234	484 aa	Known RBP	3.99	□□□□□ -1.77
CAF16	YFL028C	SSA3	P09435	649 aa	Known RBP	3.98	□□□□□ -1.77
CAF16	YFL028C	SPR1	P32603	445 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	PTM1	P32857	523 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	UTH1	P36135	365 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	YEL073C	P39974	107 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	YGR210C	P42942	411 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	ATG18	P43601	500 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	TIS11	P47977	285 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	SWS2	P53937	143 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	GOT1	Q03554	138 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	PLB3	Q08108	686 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	APC9	Q12107	265 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	FMP16	Q12497	93 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	YPL247C	Q12523	523 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	CSF1	Q12150	2958 aa		3.98	□□□□□ -1.77
CAF16	YFL028C	HFA1	P32874	2273 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	TOR1	P35169	2470 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	MEI5	P32489	222 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	ZRT1	P32804	376 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	YUH1	P35127	236 aa		3.97	□□□□□ -1.77
CAF16	YFL028C	YPT52	P36018	234 aa	Known RBP	3.97	□□□□□ -1.77
CAF16	YFL028C	ANR2	P36090	516 aa	Predicted RBP	3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 996.6 ms