RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C SPT8P38915 602 aa0.86□□□□□ -2.27
PCF11YDR228C CAB5Q03941 241 aa0.86□□□□□ -2.27
PCF11YDR228C YPL247CQ12523 523 aa0.86□□□□□ -2.27
PCF11YDR228C PET494P07390 489 aaPredicted RBP0.86□□□□□ -2.27
PCF11YDR228C DOA4P32571 926 aa0.86□□□□□ -2.27
PCF11YDR228C HMT1P38074 348 aa0.86□□□□□ -2.27
PCF11YDR228C AIM20P40451 204 aa0.86□□□□□ -2.27
PCF11YDR228C FMP41P53889 259 aaKnown RBP0.86□□□□□ -2.27
PCF11YDR228C SDC1Q03323 175 aa0.86□□□□□ -2.27
PCF11YDR228C ATP6P00854 259 aa0.85□□□□□ -2.27
PCF11YDR228C RPS0AP32905 252 aaKnown RBP0.85□□□□□ -2.27
PCF11YDR228C YKL063CP35725 167 aa0.85□□□□□ -2.27
PCF11YDR228C YJL118WP47022 219 aa0.85□□□□□ -2.27
PCF11YDR228C COX16P47081 118 aa0.85□□□□□ -2.27
PCF11YDR228C YPL077CQ02831 240 aa0.85□□□□□ -2.27
PCF11YDR228C PEX12Q04370 399 aa0.85□□□□□ -2.27
PCF11YDR228C CDC37P06101 506 aaKnown RBP0.84□□□□□ -2.27
PCF11YDR228C RPL5P26321 297 aaKnown RBP0.84□□□□□ -2.27
PCF11YDR228C SPT4P32914 102 aaPredicted RBP0.84□□□□□ -2.27
PCF11YDR228C SFC1P33303 322 aa0.84□□□□□ -2.27
PCF11YDR228C YER135CP40082 130 aa0.84□□□□□ -2.27
PCF11YDR228C VPS20Q04272 221 aa0.84□□□□□ -2.27
PCF11YDR228C YPR1Q12458 312 aa0.84□□□□□ -2.27
PCF11YDR228C CDC7P06243 507 aa0.84□□□□□ -2.28
PCF11YDR228C DPB2P24482 689 aaPredicted RBP0.84□□□□□ -2.28
PCF11YDR228C SWD2P36104 329 aaPredicted RBP0.84□□□□□ -2.28
PCF11YDR228C IBA57P47158 497 aa0.84□□□□□ -2.28
PCF11YDR228C GTO1P48239 356 aa0.84□□□□□ -2.28
PCF11YDR228C RIB4P50861 169 aaPredicted RBP0.84□□□□□ -2.28
PCF11YDR228C DAD3P69850 94 aa0.84□□□□□ -2.28
PCF11YDR228C VPS60Q03390 229 aa0.84□□□□□ -2.28
PCF11YDR228C YMR209CQ03648 457 aa0.84□□□□□ -2.28
PCF11YDR228C YMR111CQ04461 462 aaPredicted RBP0.84□□□□□ -2.28
PCF11YDR228C TAF9Q05027 157 aa0.84□□□□□ -2.28
PCF11YDR228C SIA1Q12212 622 aa0.84□□□□□ -2.28
PCF11YDR228C CCA1P21269 546 aa0.83□□□□□ -2.28
PCF11YDR228C PET18P25362 215 aa0.83□□□□□ -2.28
PCF11YDR228C AGX1P43567 385 aa0.83□□□□□ -2.28
PCF11YDR228C MDM34P53083 459 aa0.83□□□□□ -2.28
PCF11YDR228C SKI2P35207 1287 aaKnown RBP RIP-Chip data0.82□□□□□ -2.28not detected
PCF11YDR228C TEM1P38987 245 aa0.82□□□□□ -2.28
PCF11YDR228C GEP5Q12393 293 aa0.82□□□□□ -2.28
PCF11YDR228C CAR2P07991 424 aaKnown RBP0.82□□□□□ -2.28
PCF11YDR228C PUT1P09368 476 aa0.82□□□□□ -2.28
PCF11YDR228C APE4P38821 490 aa0.82□□□□□ -2.28
PCF11YDR228C LOH1P47055 219 aa0.82□□□□□ -2.28
PCF11YDR228C DBP6P53734 629 aaKnown RBP0.82□□□□□ -2.28
PCF11YDR228C ASR1Q06834 288 aa0.82□□□□□ -2.28
PCF11YDR228C SMI1P32566 505 aa0.81□□□□□ -2.28
PCF11YDR228C SSO2P39926 295 aa0.81□□□□□ -2.28
PCF11YDR228C SNX4P47057 423 aa0.81□□□□□ -2.28
PCF11YDR228C NIF3P53081 288 aa0.81□□□□□ -2.28
PCF11YDR228C RSM10Q03201 203 aa0.81□□□□□ -2.28
PCF11YDR228C YAL064W-BO13512 126 aa0.8□□□□□ -2.28
PCF11YDR228C CAM1P29547 415 aaKnown RBP0.8□□□□□ -2.28
PCF11YDR228C END3P39013 349 aa0.8□□□□□ -2.28
PCF11YDR228C PEP8P40335 379 aa0.8□□□□□ -2.28
PCF11YDR228C TAD2P47058 250 aa0.8□□□□□ -2.28
PCF11YDR228C YMR316C-AI2HB70 103 aa0.8□□□□□ -2.28
PCF11YDR228C RAS2P01120 322 aaKnown RBP0.8□□□□□ -2.28
PCF11YDR228C SGA1P08019 549 aa0.8□□□□□ -2.28
PCF11YDR228C RNP1P32385 249 aa0.8□□□□□ -2.28
PCF11YDR228C ECM13P38195 257 aa0.8□□□□□ -2.28
PCF11YDR228C RCY1P39531 840 aa0.8□□□□□ -2.28
PCF11YDR228C RPL10P41805 221 aaKnown RBP0.8□□□□□ -2.28
PCF11YDR228C AGP3P43548 558 aa0.8□□□□□ -2.28
PCF11YDR228C YJL028WP47062 111 aa0.8□□□□□ -2.28
PCF11YDR228C YNL050CP53952 270 aa0.8□□□□□ -2.28
PCF11YDR228C PRO2P54885 456 aaKnown RBP0.8□□□□□ -2.28
PCF11YDR228C INM2Q05533 292 aa0.8□□□□□ -2.28
PCF11YDR228C YLR297WQ05899 129 aa0.8□□□□□ -2.28
PCF11YDR228C RPS3P05750 240 aaKnown RBP0.79□□□□□ -2.28
PCF11YDR228C RAD3P06839 778 aa0.79□□□□□ -2.28
PCF11YDR228C DOG1P38774 246 aa0.79□□□□□ -2.28
PCF11YDR228C SER33P40510 469 aa0.79□□□□□ -2.28
PCF11YDR228C LOC1P43586 204 aaPredicted RBP0.79□□□□□ -2.28
PCF11YDR228C TRM44Q02648 567 aaKnown RBP0.79□□□□□ -2.28
PCF11YDR228C ATC1Q04005 294 aa0.79□□□□□ -2.28
PCF11YDR228C SAS5Q99314 248 aa0.79□□□□□ -2.28
PCF11YDR228C PEX3P28795 441 aa0.78□□□□□ -2.28
PCF11YDR228C VPS45P38932 577 aa0.78□□□□□ -2.28
PCF11YDR228C NPT1P39683 429 aaKnown RBP0.78□□□□□ -2.28
PCF11YDR228C AAH1P53909 347 aa0.78□□□□□ -2.28
PCF11YDR228C MGR3Q04472 501 aa0.78□□□□□ -2.28
PCF11YDR228C PEX10Q05568 337 aa0.78□□□□□ -2.28
PCF11YDR228C VAC14Q06708 880 aa0.78□□□□□ -2.28
PCF11YDR228C AI5_BETAQ9ZZX0 354 aa0.78□□□□□ -2.28
PCF11YDR228C YHB1P39676 399 aaKnown RBP0.78□□□□□ -2.29
PCF11YDR228C BOP2Q06150 570 aa0.78□□□□□ -2.29
PCF11YDR228C SEC10Q06245 871 aa0.78□□□□□ -2.29
PCF11YDR228C SAR1P20606 190 aaKnown RBP0.77□□□□□ -2.29
PCF11YDR228C YIA6P40556 373 aa0.77□□□□□ -2.29
PCF11YDR228C SMD3P43321 101 aaKnown RBP0.77□□□□□ -2.29
PCF11YDR228C NBP35P52920 328 aa0.77□□□□□ -2.29
PCF11YDR228C VOA1P53262 265 aa0.77□□□□□ -2.29
PCF11YDR228C ASI3P53983 676 aa0.77□□□□□ -2.29
PCF11YDR228C EMI1Q04406 187 aa0.77□□□□□ -2.29
PCF11YDR228C RRG8Q06109 277 aa0.77□□□□□ -2.29
PCF11YDR228C CUR1Q06469 252 aa0.77□□□□□ -2.29
PCF11YDR228C YOL162WP0CF19 215 aa0.76□□□□□ -2.29
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms