RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W PHO92Q06390 306 aa12.44□□□□□ -0.42
DEP1YAL013W YPL199CQ08954 240 aa12.44□□□□□ -0.42
DEP1YAL013W CBP6P07253 162 aaPredicted RBP12.43□□□□□ -0.42
DEP1YAL013W MATALPHA1P0CY06 175 aa12.43□□□□□ -0.42
DEP1YAL013W HMLALPHA1P0CY07 175 aa12.43□□□□□ -0.42
DEP1YAL013W SPO7P18410 259 aa12.43□□□□□ -0.42
DEP1YAL013W RPB10P22139 70 aa12.43□□□□□ -0.42
DEP1YAL013W YEL057CP39983 233 aa12.43□□□□□ -0.42
DEP1YAL013W PHB1P40961 287 aa12.43□□□□□ -0.42
DEP1YAL013W MTM1P53320 366 aa12.43□□□□□ -0.42
DEP1YAL013W YLR152CP54072 576 aa12.43□□□□□ -0.42
DEP1YAL013W KAP120Q02932 1032 aa12.43□□□□□ -0.42
DEP1YAL013W SSK1Q07084 712 aa12.43□□□□□ -0.42
DEP1YAL013W MKS1P34072 584 aa12.42□□□□□ -0.42
DEP1YAL013W PEX30Q06169 523 aa12.42□□□□□ -0.42
DEP1YAL013W ASR1Q06834 288 aa12.42□□□□□ -0.42
DEP1YAL013W KRR1P25586 316 aaPredicted RBP12.41□□□□□ -0.42
DEP1YAL013W PRE4P30657 266 aa12.41□□□□□ -0.42
DEP1YAL013W HTD2P38790 280 aaKnown RBP12.41□□□□□ -0.42
DEP1YAL013W RPS26AP39938 119 aaKnown RBP12.41□□□□□ -0.42
DEP1YAL013W RPS26BP39939 119 aaKnown RBP12.41□□□□□ -0.42
DEP1YAL013W PUG1P40100 303 aa12.41□□□□□ -0.42
DEP1YAL013W SLZ1P40167 298 aa12.41□□□□□ -0.42
DEP1YAL013W DPB11P47027 764 aaPredicted RBP12.41□□□□□ -0.42
DEP1YAL013W MSE1P48525 536 aa12.41□□□□□ -0.42
DEP1YAL013W YIP4P53093 235 aa12.41□□□□□ -0.42
DEP1YAL013W SAM50P53969 484 aa12.41□□□□□ -0.42
DEP1YAL013W YMR130WQ04223 302 aa12.41□□□□□ -0.42
DEP1YAL013W HRI1Q05905 244 aaKnown RBP12.41□□□□□ -0.42
DEP1YAL013W PDA1P16387 420 aaKnown RBP12.4□□□□□ -0.42
DEP1YAL013W BUD23P25627 275 aaPredicted RBP12.4□□□□□ -0.42
DEP1YAL013W CNE1P27825 502 aa12.4□□□□□ -0.42
DEP1YAL013W HPA3P39979 161 aa12.4□□□□□ -0.42
DEP1YAL013W YKE4P40544 346 aa12.4□□□□□ -0.42
DEP1YAL013W YNL165WP53891 406 aa12.4□□□□□ -0.42
DEP1YAL013W TMS1Q12116 473 aa12.4□□□□□ -0.42
DEP1YAL013W INP53Q12271 1107 aa12.4□□□□□ -0.42
DEP1YAL013W ORT1Q12375 292 aa12.4□□□□□ -0.42
DEP1YAL013W NOP56Q12460 504 aaKnown RBP RIP-Chip data12.4□□□□□ -0.42not detected
DEP1YAL013W RRI1Q12468 440 aa12.4□□□□□ -0.42
DEP1YAL013W PET54P10834 293 aa12.39□□□□□ -0.43
DEP1YAL013W KRE6P32486 720 aa12.39□□□□□ -0.43
DEP1YAL013W FRM2P37261 193 aa12.39□□□□□ -0.43
DEP1YAL013W ADO1P47143 340 aaKnown RBP12.39□□□□□ -0.43
DEP1YAL013W LSM7P53905 115 aaKnown RBP12.39□□□□□ -0.43
DEP1YAL013W RVB1Q03940 463 aaKnown RBP12.39□□□□□ -0.43
DEP1YAL013W GAS2Q06135 555 aa12.39□□□□□ -0.43
DEP1YAL013W KEI1Q06346 221 aa12.39□□□□□ -0.43
DEP1YAL013W RPL7AP05737 244 aaKnown RBP12.38□□□□□ -0.43
DEP1YAL013W ERG9P29704 444 aa12.38□□□□□ -0.43
DEP1YAL013W RCN1P36054 211 aa12.38□□□□□ -0.43
DEP1YAL013W SRL3P36167 246 aa12.38□□□□□ -0.43
DEP1YAL013W PXR1P53335 271 aaPredicted RBP12.38□□□□□ -0.43
DEP1YAL013W MRPL19P53875 158 aa12.38□□□□□ -0.43
DEP1YAL013W COQ11Q05892 277 aa12.38□□□□□ -0.43
DEP1YAL013W HEM25Q07534 307 aa12.38□□□□□ -0.43
DEP1YAL013W RPL7BQ12213 244 aaKnown RBP12.38□□□□□ -0.43
DEP1YAL013W YLR358CO13565 187 aa12.37□□□□□ -0.43
DEP1YAL013W ITR1P30605 584 aa12.37□□□□□ -0.43
DEP1YAL013W HYM1P32464 399 aa12.37□□□□□ -0.43
DEP1YAL013W TAT1P38085 619 aa12.37□□□□□ -0.43
DEP1YAL013W SMB1P40018 196 aaKnown RBP12.37□□□□□ -0.43
DEP1YAL013W YNR040WP53736 256 aa12.37□□□□□ -0.43
DEP1YAL013W FRE3Q08905 711 aa12.37□□□□□ -0.43
DEP1YAL013W TGS1Q12052 315 aa12.37□□□□□ -0.43
DEP1YAL013W RTC5Q12108 567 aaKnown RBP12.37□□□□□ -0.43
DEP1YAL013W PCL1P24867 279 aa12.36□□□□□ -0.43
DEP1YAL013W MRPL39P36533 70 aa12.36□□□□□ -0.43
DEP1YAL013W DLS1P40366 167 aa12.36□□□□□ -0.43
DEP1YAL013W TIR3P40552 269 aa12.36□□□□□ -0.43
DEP1YAL013W BUD8P41698 603 aa12.36□□□□□ -0.43
DEP1YAL013W AAD14P42884 376 aa12.36□□□□□ -0.43
DEP1YAL013W LOH1P47055 219 aa12.36□□□□□ -0.43
DEP1YAL013W RPN14P53196 417 aa12.36□□□□□ -0.43
DEP1YAL013W YMR265CQ03508 461 aaKnown RBP12.36□□□□□ -0.43
DEP1YAL013W ENV7Q12003 364 aa12.36□□□□□ -0.43
DEP1YAL013W SSH1P38353 490 aaKnown RBP12.35□□□□□ -0.43
DEP1YAL013W MTC6P38849 526 aa12.35□□□□□ -0.43
DEP1YAL013W NIT3P49954 291 aa12.35□□□□□ -0.43
DEP1YAL013W SLI1P53304 468 aa12.35□□□□□ -0.43
DEP1YAL013W AAH1P53909 347 aa12.35□□□□□ -0.43
DEP1YAL013W SUR7P54003 302 aa12.35□□□□□ -0.43
DEP1YAL013W YBR056W-AI2HB52 66 aa12.34□□□□□ -0.43
DEP1YAL013W GPM1P00950 247 aaKnown RBP12.34□□□□□ -0.43
DEP1YAL013W PRB1P09232 635 aa12.34□□□□□ -0.43
DEP1YAL013W RPS16AP0CX51 143 aaKnown RBP12.34□□□□□ -0.43
DEP1YAL013W RPS16BP0CX52 143 aaKnown RBP12.34□□□□□ -0.43
DEP1YAL013W ACH1P32316 526 aa12.34□□□□□ -0.43
DEP1YAL013W PPG1P32838 368 aa12.34□□□□□ -0.43
DEP1YAL013W YBR096WP38256 230 aa12.34□□□□□ -0.43
DEP1YAL013W SYS1P41544 203 aa12.34□□□□□ -0.43
DEP1YAL013W ERJ5P43613 295 aaPredicted RBP12.34□□□□□ -0.43
DEP1YAL013W POP6P53218 158 aa12.34□□□□□ -0.43
DEP1YAL013W FMP48P53233 369 aa12.34□□□□□ -0.43
DEP1YAL013W VHT1P53241 593 aa12.34□□□□□ -0.43
DEP1YAL013W YDR387CQ04162 555 aa12.34□□□□□ -0.43
DEP1YAL013W YDL180WQ12301 547 aa12.34□□□□□ -0.43
DEP1YAL013W FUR4P05316 633 aaKnown RBP12.33□□□□□ -0.44
DEP1YAL013W SED4P25365 1065 aa12.33□□□□□ -0.44
DEP1YAL013W SNC2P33328 115 aa12.33□□□□□ -0.44
Retrieved 100 of 5,963 RNA–protein pairs in 53.4 ms