RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 SYN1P17600 705 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 ADSLP30566 484 aaPredicted RBP9.15□□□□□ -0.94
VMP1-208ENST00000588617 STAT5AP42229 794 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 SUMO3P55854 103 aaPredicted RBP9.15□□□□□ -0.94
VMP1-208ENST00000588617 GEMIN4P57678 1058 aaKnown RBP9.15□□□□□ -0.94
VMP1-208ENST00000588617 CDC42EP1Q00587 391 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 VASNQ6EMK4 673 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 SESTD1Q86VW0 696 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 TBC1D20Q96BZ9 403 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 SAMD11Q96NU1 681 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 DMRTA2Q96SC8 542 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 PRDM7Q9NQW5 492 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 CNNM1Q9NRU3 951 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 RRN3Q9NYV6 651 aa9.15□□□□□ -0.94
VMP1-208ENST00000588617 BCCIPQ9P287 314 aaKnown RBP eCLIP9.15□□□□□ -0.94
VMP1-208ENST00000588617 F8W8V4 182 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 M0R3H8 397 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 MYO1FO00160 1098 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 FFAR2O15552 330 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 TRHRP34981 398 aaPredicted RBP9.14□□□□□ -0.95
VMP1-208ENST00000588617 HSPA7P48741 367 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 ERVFC1P60507 584 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 DOC2BQ14184 412 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 TIGD5Q53EQ6 642 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 KLHDC7AQ5VTJ3 777 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 ANKRD18AQ8IVF6 992 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 RNF152Q8N8N0 203 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 BCL7CQ8WUZ0 217 aaPredicted RBP9.14□□□□□ -0.95
VMP1-208ENST00000588617 SKA1Q96BD8 255 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 PAGR1Q9BTK6 254 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 BCAS3Q9H6U6 928 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 SARS2Q9NP81 518 aaKnown RBP9.14□□□□□ -0.95
VMP1-208ENST00000588617 CPNE7Q9UBL6 633 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 SLC5A6Q9Y289 635 aa9.14□□□□□ -0.95
VMP1-208ENST00000588617 RPTORQ8N122 1335 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 EPB41L2O43491 1005 aaKnown RBP9.13□□□□□ -0.95
VMP1-208ENST00000588617 ENDOD1O94919 500 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 PAPLNO95428 1278 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 THP07101 528 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 ITGB7P26010 798 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 DDIT3P35638 169 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 PRR5P85299 388 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 TARDBPQ13148 414 aaKnown RBP eCLIP9.13□□□□□ -0.95
VMP1-208ENST00000588617 NR1I3Q14994 352 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 DGKDQ16760 1214 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 ARL13BQ3SXY8 428 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 LIPIQ6XZB0 460 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 PDZD4Q76G19 769 aaPredicted RBP9.13□□□□□ -0.95
VMP1-208ENST00000588617 PROSER1Q86XN7 944 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 OR5AN1Q8NGI8 311 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 DDX11Q96FC9 970 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 TSPAN17Q96FV3 270 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 PPP1R16BQ96T49 567 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 COLEC11Q9BWP8 271 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 MANSC1Q9H8J5 431 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 FEZ2Q9UHY8 353 aaPredicted RBP9.13□□□□□ -0.95
VMP1-208ENST00000588617 MAGEL2Q9UJ55 1249 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 PCDHA6Q9UN73 950 aa9.13□□□□□ -0.95
VMP1-208ENST00000588617 A0A0A6YYK5 440 aaPredicted RBP9.12□□□□□ -0.95
VMP1-208ENST00000588617 NUDT19A8MXV4 375 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 TMEM127O75204 238 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 HPXP02790 462 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 HSP90AA1P07900 732 aaKnown RBP9.12□□□□□ -0.95
VMP1-208ENST00000588617 FAM163BP0C2L3 166 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 NPR1P16066 1061 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 CTSSP25774 331 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 SMARCA1P28370 1054 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 DDX10Q13206 875 aaKnown RBP9.12□□□□□ -0.95
VMP1-208ENST00000588617 TBX2Q13207 712 aaPredicted RBP9.12□□□□□ -0.95
VMP1-208ENST00000588617 GRM1Q13255 1194 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 MPEG1Q2M385 716 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 TMC5Q6UXY8 1006 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 GADL1Q6ZQY3 521 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 SPRED2Q7Z698 418 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 MIB1Q86YT6 1006 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 ZNF566Q969W8 418 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 SHISA4Q96DD7 197 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 DYDC2Q96IM9 177 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 TMX3Q96JJ7 454 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 MRGPRX4Q96LA9 322 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 SOX7Q9BT81 388 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 PCDHA1Q9Y5I3 950 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 HCFC2Q9Y5Z7 792 aa9.12□□□□□ -0.95
VMP1-208ENST00000588617 LRRFIP2Q9Y608 721 aaKnown RBP9.12□□□□□ -0.95
VMP1-208ENST00000588617 SKAP2O75563 359 aaPredicted RBP9.11□□□□□ -0.95
VMP1-208ENST00000588617 SDHBP21912 280 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 ECHS1P30084 290 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 CASP2P42575 452 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 PER3P56645 1201 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 ANTXR2P58335 489 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 NKX3-2P78367 333 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 SNAPC2Q13487 334 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 RAB39AQ14964 217 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 MSMPQ1L6U9 139 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 SKIDA1Q1XH10 827 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 KHDC1LQ5JSQ8 128 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 GJC2Q5T442 439 aaPredicted RBP9.11□□□□□ -0.95
VMP1-208ENST00000588617 MZT2AQ6P582 158 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 ETV3LQ6ZN32 361 aa9.11□□□□□ -0.95
VMP1-208ENST00000588617 ZNF574Q6ZN55 896 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms