RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 FBXW11Q9UKB1 542 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 GMEB2Q9UKD1 530 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 IPPQ9Y573 584 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 CHD6Q8TD26 2715 aa12.25□□□□□ -0.45
DDX41-216ENST00000513562 USP24Q9UPU5 2620 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 DDX11L8A8MPP1 907 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 SLC30A4O14863 429 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 HNRNPA1P09651 372 aaKnown RBP eCLIP12.24□□□□□ -0.45
DDX41-216ENST00000513562 TDGF1P13385 188 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 RPL17P18621 184 aaKnown RBP12.24□□□□□ -0.45
DDX41-216ENST00000513562 ADD1P35611 737 aaKnown RBP12.24□□□□□ -0.45
DDX41-216ENST00000513562 NTHL1P78549 312 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 Q4G0T1 1027 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 PPM1JQ5JR12 505 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 PLA2G4FQ68DD2 849 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 DHX32Q7L7V1 743 aaKnown RBP12.24□□□□□ -0.45
DDX41-216ENST00000513562 NETO1Q8TDF5 533 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 PSPC1Q8WXF1 523 aaKnown RBP12.24□□□□□ -0.45
DDX41-216ENST00000513562 SLC7A3Q8WY07 619 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 CCDC51Q96ER9 411 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 ZFP42Q96MM3 310 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 NELL2Q99435 816 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 COLEC11Q9BWP8 271 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 EIF2AQ9BY44 585 aaKnown RBP12.24□□□□□ -0.45
DDX41-216ENST00000513562 MIOSQ9NXC5 875 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 ADAM28Q9UKQ2 775 aa12.24□□□□□ -0.45
DDX41-216ENST00000513562 CCDC196A0A1B0GTZ2 297 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 NCAM2O15394 837 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 POU2F2P09086 479 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 SRGAP2CP0DJJ0 459 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 HOXA9P31269 272 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 PSMC5P62195 406 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 LAMTOR4Q0VGL1 99 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 FZD5Q13467 585 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 RTP2Q5QGT7 225 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 LIN9Q5TKA1 542 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 TPRG1Q6ZUI0 275 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 ITFG1Q8TB96 612 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 PRPF31Q8WWY3 499 aaKnown RBP12.23□□□□□ -0.45
DDX41-216ENST00000513562 ESYT1Q9BSJ8 1104 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 PHF20Q9BVI0 1012 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 DHX33Q9H6R0 707 aaKnown RBP12.23□□□□□ -0.45
DDX41-216ENST00000513562 GIT1Q9Y2X7 761 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 HES2Q9Y543 173 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 PPME1Q9Y570 386 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 CHD8Q9HCK8 2581 aa12.23□□□□□ -0.45
DDX41-216ENST00000513562 DOCK8Q8NF50 2099 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 CYP3A7-CYP3A51PA0A087WV96 503 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 SHISA7A6NL88 538 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 PRPF3O43395 683 aaKnown RBP12.22□□□□□ -0.45
DDX41-216ENST00000513562 TSPAN1O60635 241 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 LRP3O75074 770 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 ERLIN2O94905 339 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 C8AP07357 584 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 CYP3A7P24462 503 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 AXLP30530 894 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 NPEPPSP55786 919 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 SPEM2Q0P670 501 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 MTAPQ13126 283 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 PCBP1Q15365 356 aaKnown RBP eCLIP12.22□□□□□ -0.45
DDX41-216ENST00000513562 RNF20Q5VTR2 975 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 LAIR1Q6GTX8 287 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 NOTUMQ6P988 496 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 PRSS55Q6UWB4 352 aaPredicted RBP12.22□□□□□ -0.45
DDX41-216ENST00000513562 ZNF852Q6ZMS4 543 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 NPAS3Q8IXF0 933 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 EXOC8Q8IYI6 725 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 RNF149Q8NC42 400 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 GSTCDQ8NEC7 633 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 CCDC148Q8NFR7 591 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 ETNPPLQ8TBG4 499 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 TMEM143Q96AN5 459 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 CHAMP1Q96JM3 812 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 KXD1Q9BQD3 176 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 ANO2Q9NQ90 1003 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.22□□□□□ -0.45
DDX41-216ENST00000513562 PATJQ8NI35 1801 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 SPTBN2O15020 2390 aa12.22□□□□□ -0.45
DDX41-216ENST00000513562 NID2Q14112 1375 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 ZMYM2Q9UBW7 1377 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 SF3B1O75533 1304 aaKnown RBP eCLIP12.21□□□□□ -0.454e-7■■■■■ 133.7
DDX41-216ENST00000513562 CCL16O15467 120 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 XYLBO75191 536 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 TDP2O95551 362 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 RFC5P40937 340 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 ADCY1Q08828 1119 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 GRIK3Q13003 919 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 PPM1LQ5SGD2 360 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 MAMSTRQ6ZN01 415 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 ZNF687Q8N1G0 1237 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 ZNF579Q8NAF0 562 aaKnown RBP12.21□□□□□ -0.45
DDX41-216ENST00000513562 TBCKQ8TEA7 893 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 PIK3R5Q8WYR1 880 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 CEP170P1Q96L14 293 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 CLSTN3Q9BQT9 956 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 CSRNP2Q9H175 543 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 NXF3Q9H4D5 531 aaKnown RBP12.21□□□□□ -0.45
DDX41-216ENST00000513562 KCNH3Q9ULD8 1083 aa12.21□□□□□ -0.45
DDX41-216ENST00000513562 MRPS17Q9Y2R5 130 aaKnown RBP12.21□□□□□ -0.45
DDX41-216ENST00000513562 MYH9P35579 1960 aaKnown RBP12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms