RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 RDM1Q8NG50 284 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 FGF13Q92913 245 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 CCDC136Q96JN2 1154 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 PRMT8Q9NR22 394 aaPredicted RBP18.45■□□□□ 0.54
VIM-208ENST00000497849 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.45■□□□□ 0.54
VIM-208ENST00000497849 COL4A3BPQ9Y5P4 624 aa18.45■□□□□ 0.54
VIM-208ENST00000497849 DDX11L8A8MPP1 907 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 ITGA4P13612 1032 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 ADD1P35611 737 aaKnown RBP18.44■□□□□ 0.54
VIM-208ENST00000497849 MLH1P40692 756 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 SCNN1GP51170 649 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 USP41Q3LFD5 358 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 PPM1JQ5JR12 505 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 ZBTB41Q5SVQ8 909 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 PLA2G4FQ68DD2 849 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 FUT10Q6P4F1 479 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 MTSS1LQ765P7 747 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 SRGAP1Q7Z6B7 1085 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 ZFP42Q96MM3 310 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 UBN1Q9NPG3 1134 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 FBXW11Q9UKB1 542 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 IPPQ9Y573 584 aa18.44■□□□□ 0.54
VIM-208ENST00000497849 SHISA7A6NL88 538 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 RPS9P46781 194 aaKnown RBP18.43■□□□□ 0.54
VIM-208ENST00000497849 PFKPQ01813 784 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 SPEM2Q0P670 501 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 CNNM3Q8NE01 707 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 ITFG1Q8TB96 612 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 CHAMP1Q96JM3 812 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 KXD1Q9BQD3 176 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 COLEC11Q9BWP8 271 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 EIF2AQ9BY44 585 aaKnown RBP18.43■□□□□ 0.54
VIM-208ENST00000497849 PPP4R2Q9NY27 417 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 GMEB2Q9UKD1 530 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 RALYQ9UKM9 306 aaKnown RBP18.43■□□□□ 0.54
VIM-208ENST00000497849 HES2Q9Y543 173 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.43■□□□□ 0.54
VIM-208ENST00000497849 CNOT1A5YKK6 2376 aaKnown RBP18.43■□□□□ 0.54
VIM-208ENST00000497849 ATRXP46100 2492 aa18.43■□□□□ 0.54
VIM-208ENST00000497849 KLF18A0A0U1RQI7 1052 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 SLC30A4O14863 429 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 SRGAP2CP0DJJ0 459 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 TDGF1P13385 188 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 GNA11P29992 359 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 USP11P51784 963 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 PRSS55Q6UWB4 352 aaPredicted RBP18.42■□□□□ 0.54
VIM-208ENST00000497849 TPRG1Q6ZUI0 275 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 ZNF579Q8NAF0 562 aaKnown RBP18.42■□□□□ 0.54
VIM-208ENST00000497849 GSTCDQ8NEC7 633 aa18.42■□□□□ 0.54
VIM-208ENST00000497849 CCDC12Q8WUD4 166 aaPredicted RBP18.42■□□□□ 0.54
VIM-208ENST00000497849 PRPF31Q8WWY3 499 aaKnown RBP18.42■□□□□ 0.54
VIM-208ENST00000497849 JPH2Q9BR39 696 aaPredicted RBP18.42■□□□□ 0.54
VIM-208ENST00000497849 NPEPPSP55786 919 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 MTAPQ13126 283 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 LPAL2Q16609 132 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 RTP2Q5QGT7 225 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 NETO1Q8TDF5 533 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 RABGGTAQ92696 567 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 TMEM143Q96AN5 459 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 NELL2Q99435 816 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 PHF20Q9BVI0 1012 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 FAM126AQ9BYI3 521 aaPredicted RBP18.41■□□□□ 0.54
VIM-208ENST00000497849 ADAM28Q9UKQ2 775 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 FAM208BQ5VWN6 2430 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 F5P12259 2224 aa18.41■□□□□ 0.54
VIM-208ENST00000497849 NR1I2O75469 434 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 HNRNPA1P09651 372 aaKnown RBP eCLIP18.4■□□□□ 0.54
VIM-208ENST00000497849 RCAN1P53805 252 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 CREMQ03060 361 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 LAMTOR4Q0VGL1 99 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 Q4G0T1 1027 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 DHX32Q7L7V1 743 aaKnown RBP18.4■□□□□ 0.54
VIM-208ENST00000497849 SKAP1Q86WV1 359 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 CLSTN3Q9BQT9 956 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 RALGAPA1Q6GYQ0 2036 aa18.4■□□□□ 0.54
VIM-208ENST00000497849 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.39■□□□□ 0.53
VIM-208ENST00000497849 NCAM2O15394 837 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 CCL16O15467 120 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 TSPAN1O60635 241 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 C8AP07357 584 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 PSMC5P62195 406 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 NPAS3Q8IXF0 933 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 ZNF687Q8N1G0 1237 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 PSPC1Q8WXF1 523 aaKnown RBP18.39■□□□□ 0.53
VIM-208ENST00000497849 SLC7A3Q8WY07 619 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 ESYT1Q9BSJ8 1104 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 PLA2G2FQ9BZM2 168 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 DHX33Q9H6R0 707 aaKnown RBP18.39■□□□□ 0.53
VIM-208ENST00000497849 HEBP1Q9NRV9 189 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 CACNG4Q9UBN1 327 aa18.39■□□□□ 0.53
VIM-208ENST00000497849 PRPF3O43395 683 aaKnown RBP18.38■□□□□ 0.53
VIM-208ENST00000497849 TDP2O95551 362 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 HOXA9P31269 272 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 ADCY1Q08828 1119 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 PPM1LQ5SGD2 360 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 LIN9Q5TKA1 542 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 LAIR1Q6GTX8 287 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 POTEHQ6S545 545 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 ZNF852Q6ZMS4 543 aa18.38■□□□□ 0.53
VIM-208ENST00000497849 RNF149Q8NC42 400 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms