RNA–Protein interactions for RNA: YNL197C

WHI3, Transcript of RNA binding protein that sequesters CLN3 mRNA in cytoplasmic foci, yeast

Gene WHI3, Length 1,986 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
WHI3	YNL197C	BNA6	P43619	295 aa		2.71	□□□□□ -1.98
WHI3	YNL197C	PEX31	P53203	462 aa		2.71	□□□□□ -1.98
WHI3	YNL197C	TRM44	Q02648	567 aa	Known RBP	2.71	□□□□□ -1.98
WHI3	YNL197C	SFH1	Q06168	426 aa		2.71	□□□□□ -1.98
WHI3	YNL197C	PIN3	Q06449	215 aa		2.71	□□□□□ -1.98
WHI3	YNL197C	YOL029C	Q08187	201 aa		2.71	□□□□□ -1.98
WHI3	YNL197C	FOL3	Q12676	427 aa	Predicted RBP	2.71	□□□□□ -1.98
WHI3	YNL197C	RPS3	P05750	240 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	RPB9	P27999	122 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	PRS1	P32895	427 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	DED81	P38707	554 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	TAD2	P47058	250 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	NBP1	P52919	319 aa	Predicted RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	MNT4	P53745	580 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	INP1	Q03694	420 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	RLP24	Q07915	199 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	BTS1	Q12051	335 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	TIR4	Q12218	487 aa	Predicted RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	YOR029W	Q12243	111 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	MED4	Q12343	284 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	TRM10	Q12400	293 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	YAL063C-A	Q3E791	96 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	VPH2	P32341	215 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	CDC13	P32797	924 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	SDS24	P38314	527 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	NBP35	P52920	328 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	VEL1	P53058	206 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	SWS2	P53937	143 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	ALG11	P53954	548 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	PET117	Q02771	107 aa		2.7	□□□□□ -1.98
WHI3	YNL197C	ADH6	Q04894	360 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	DFM1	Q12743	341 aa	Known RBP	2.7	□□□□□ -1.98
WHI3	YNL197C	ASP3-2	P0CX77	362 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	ASP3-3	P0CX78	362 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	ASP3-4	P0CX79	362 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	ASP3-1	P0CZ17	362 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	VPS1	P21576	704 aa	Known RBP	2.69	□□□□□ -1.98
WHI3	YNL197C	ZRT3	P34240	503 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	GLG2	P47011	380 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	YML018C	Q03730	393 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	VIK1	Q12045	647 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	SOD1	P00445	154 aa	Known RBP	2.69	□□□□□ -1.98
WHI3	YNL197C	HIS1	P00498	297 aa	Known RBP	2.69	□□□□□ -1.98
WHI3	YNL197C	EPT1	P22140	391 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	SEO1	P39709	593 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	MAL13	P53338	473 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	SDC1	Q03323	175 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	MSH5	Q12175	901 aa		2.69	□□□□□ -1.98
WHI3	YNL197C	SME1	Q12330	94 aa	Predicted RBP	2.69	□□□□□ -1.98
WHI3	YNL197C	COX10	P21592	462 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	DAL82	P21705	255 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	ZIP1	P31111	875 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	MRX3	P38172	270 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	PRS2	P38620	318 aa	Known RBP	2.68	□□□□□ -1.98
WHI3	YNL197C	YER184C	P39961	794 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	HIT1	P46973	164 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	LIA1	P47120	325 aa	Known RBP	2.68	□□□□□ -1.98
WHI3	YNL197C	YPL113C	Q02961	396 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	VPS60	Q03390	229 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	TAF9	Q05027	157 aa		2.68	□□□□□ -1.98
WHI3	YNL197C	DIB1	Q06819	143 aa	Predicted RBP	2.68	□□□□□ -1.98
WHI3	YNL197C	YAL064W-B	O13512	126 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	EHD3	P28817	500 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	SMB1	P40018	196 aa	Known RBP	2.67	□□□□□ -1.98
WHI3	YNL197C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	2.67	□□□□□ -1.98	not detected
WHI3	YNL197C	YPL278C	Q08990	100 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	TFC7	Q12415	435 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	CFT1	Q06632	1357 aa	Known RBP	2.67	□□□□□ -1.98
WHI3	YNL197C	RPS5	P26783	225 aa	Known RBP	2.67	□□□□□ -1.98
WHI3	YNL197C	MRPL3	P36516	390 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	MRP21	P38175	177 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	ECM34	P38728	170 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	AVT7	P40501	490 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	DSN1	P40568	576 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	UFE1	P41834	346 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	YFL064C	P43540	174 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	LIF1	P53150	421 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	SEC10	Q06245	871 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	PAM18	Q07914	168 aa		2.67	□□□□□ -1.98
WHI3	YNL197C	PSK1	P31374	1356 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	PEX3	P28795	441 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	YER085C	P40058	173 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	FMC1	P40491	155 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	ASG7	P46993	209 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	YLR283W	Q05867	314 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	CTR3	Q06686	241 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	YOS9	Q99220	542 aa		2.66	□□□□□ -1.98
WHI3	YNL197C	QRI5	P32344	111 aa		2.65	□□□□□ -1.98
WHI3	YNL197C	MSN4	P33749	630 aa		2.65	□□□□□ -1.98
WHI3	YNL197C	SEN34	P39707	275 aa		2.65	□□□□□ -1.98
WHI3	YNL197C	UTP15	Q04305	513 aa	Known RBP	2.65	□□□□□ -1.98
WHI3	YNL197C	PER33	Q12144	273 aa		2.65	□□□□□ -1.98
WHI3	YNL197C	FLO11	P08640	1367 aa		2.65	□□□□□ -1.98
WHI3	YNL197C	CDC42	P19073	191 aa		2.65	□□□□□ -1.99
WHI3	YNL197C	RPO26	P20435	155 aa		2.65	□□□□□ -1.99
WHI3	YNL197C	AIM29	P36154	155 aa		2.65	□□□□□ -1.99
WHI3	YNL197C	SHC1	P39000	512 aa		2.65	□□□□□ -1.99
WHI3	YNL197C	MIC19	P43594	170 aa		2.65	□□□□□ -1.99
WHI3	YNL197C	FMP41	P53889	259 aa	Known RBP	2.65	□□□□□ -1.99
WHI3	YNL197C	MYO5	Q04439	1219 aa	Known RBP	2.65	□□□□□ -1.99

Retrieved 100 of 5,963 RNA–protein pairs in 24.6 ms