RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C SER33P40510 469 aa5.21□□□□□ -1.58
DEF1YKL054C YNR066CP53752 436 aa5.21□□□□□ -1.58
DEF1YKL054C ASI3P53983 676 aa5.21□□□□□ -1.58
DEF1YKL054C YPR147CQ06522 304 aaKnown RBP5.21□□□□□ -1.58
DEF1YKL054C HNT3Q08702 217 aa5.21□□□□□ -1.58
DEF1YKL054C MMT2Q08970 484 aa5.21□□□□□ -1.58
DEF1YKL054C YGK3Q12222 375 aaPredicted RBP5.21□□□□□ -1.58
DEF1YKL054C YPR064WQ12492 139 aa5.21□□□□□ -1.58
DEF1YKL054C GLC7P32598 312 aaKnown RBP5.2□□□□□ -1.58
DEF1YKL054C KIN4Q01919 800 aa5.2□□□□□ -1.58
DEF1YKL054C YMR206WQ03695 313 aa5.2□□□□□ -1.58
DEF1YKL054C TPO3Q06451 622 aa5.2□□□□□ -1.58
DEF1YKL054C YDR018CQ12185 396 aa5.2□□□□□ -1.58
DEF1YKL054C PET20Q99373 253 aa5.2□□□□□ -1.58
DEF1YKL054C RPL28P02406 149 aaKnown RBP5.2□□□□□ -1.58
DEF1YKL054C RPS3P05750 240 aaKnown RBP5.2□□□□□ -1.58
DEF1YKL054C BCY1P07278 416 aaKnown RBP5.2□□□□□ -1.58
DEF1YKL054C PET494P07390 489 aaPredicted RBP5.2□□□□□ -1.58
DEF1YKL054C GCY1P14065 312 aaKnown RBP RIP-Chip data5.2□□□□□ -1.58not detected
DEF1YKL054C UBC8P28263 218 aa5.2□□□□□ -1.58
DEF1YKL054C PDC2P32896 925 aa5.2□□□□□ -1.58
DEF1YKL054C SHG1P38337 142 aa5.2□□□□□ -1.58
DEF1YKL054C YIL169CP40442 995 aa5.2□□□□□ -1.58
DEF1YKL054C RTS2P40962 232 aa5.2□□□□□ -1.58
DEF1YKL054C TRM9P49957 279 aa5.2□□□□□ -1.58
DEF1YKL054C NSA1P53136 463 aaPredicted RBP5.2□□□□□ -1.58
DEF1YKL054C SYF2P53277 215 aaPredicted RBP5.2□□□□□ -1.58
DEF1YKL054C NRK1P53915 240 aa5.2□□□□□ -1.58
DEF1YKL054C YLR152CP54072 576 aa5.2□□□□□ -1.58
DEF1YKL054C COQ10Q08058 207 aa5.2□□□□□ -1.58
DEF1YKL054C YLR112WQ12130 139 aa5.2□□□□□ -1.58
DEF1YKL054C FRE8Q12209 686 aa5.2□□□□□ -1.58
DEF1YKL054C YKR041WP36134 250 aa5.19□□□□□ -1.58
DEF1YKL054C HMT1P38074 348 aa5.19□□□□□ -1.58
DEF1YKL054C ECM13P38195 257 aa5.19□□□□□ -1.58
DEF1YKL054C AVT4P50944 713 aa5.19□□□□□ -1.58
DEF1YKL054C TOS8P53147 276 aa5.19□□□□□ -1.58
DEF1YKL054C NQM1P53228 333 aaPredicted RBP5.19□□□□□ -1.58
DEF1YKL054C TRM82Q03774 444 aa5.19□□□□□ -1.58
DEF1YKL054C YML096WQ04489 525 aa5.19□□□□□ -1.58
DEF1YKL054C YEH2Q07950 538 aa5.19□□□□□ -1.58
DEF1YKL054C ICT1Q12385 394 aa5.19□□□□□ -1.58
DEF1YKL054C VPH2P32341 215 aa5.19□□□□□ -1.58
DEF1YKL054C DER1P38307 211 aa5.19□□□□□ -1.58
DEF1YKL054C GRE3P38715 327 aaKnown RBP RIP-Chip data5.19□□□□□ -1.58not detected
DEF1YKL054C GOS1P38736 223 aa5.19□□□□□ -1.58
DEF1YKL054C SEO1P39709 593 aa5.19□□□□□ -1.58
DEF1YKL054C YPS5P53057 165 aa5.19□□□□□ -1.58
DEF1YKL054C RIF2Q06208 395 aa5.19□□□□□ -1.58
DEF1YKL054C YPL150WQ12152 901 aa5.19□□□□□ -1.58
DEF1YKL054C NOT5Q12514 560 aaPredicted RBP5.19□□□□□ -1.58
DEF1YKL054C SPS100P13130 326 aa5.18□□□□□ -1.58
DEF1YKL054C GRX2P17695 143 aaKnown RBP5.18□□□□□ -1.58
DEF1YKL054C SRY1P36007 326 aa5.18□□□□□ -1.58
DEF1YKL054C AVT5P38176 459 aa5.18□□□□□ -1.58
DEF1YKL054C NDT80P38830 627 aa5.18□□□□□ -1.58
DEF1YKL054C YIA6P40556 373 aa5.18□□□□□ -1.58
DEF1YKL054C YJR056CP47115 236 aa5.18□□□□□ -1.58
DEF1YKL054C MMS2P53152 137 aa5.18□□□□□ -1.58
DEF1YKL054C YLR446WQ06204 433 aa5.18□□□□□ -1.58
DEF1YKL054C YDL199CQ12407 687 aa5.18□□□□□ -1.58
DEF1YKL054C PRM4Q12498 284 aa5.18□□□□□ -1.58
DEF1YKL054C SIR4P11978 1358 aa5.18□□□□□ -1.58
DEF1YKL054C MET2P08465 486 aa5.17□□□□□ -1.58
DEF1YKL054C GLN3P18494 730 aa5.17□□□□□ -1.58
DEF1YKL054C HCM1P25364 564 aa5.17□□□□□ -1.58
DEF1YKL054C PET8P38921 284 aa5.17□□□□□ -1.58
DEF1YKL054C SUR7P54003 302 aa5.17□□□□□ -1.58
DEF1YKL054C NSL1Q12143 216 aa5.17□□□□□ -1.58
DEF1YKL054C EMP46Q12396 444 aa5.17□□□□□ -1.58
DEF1YKL054C FOL3Q12676 427 aaPredicted RBP5.17□□□□□ -1.58
DEF1YKL054C SPS18P32572 300 aa5.17□□□□□ -1.58
DEF1YKL054C YNK1P36010 153 aaKnown RBP5.17□□□□□ -1.58
DEF1YKL054C SOK1P40317 901 aa5.17□□□□□ -1.58
DEF1YKL054C AIM23P47015 356 aa5.17□□□□□ -1.58
DEF1YKL054C YGL235WP53071 178 aa5.17□□□□□ -1.58
DEF1YKL054C HCH1P53834 153 aa5.17□□□□□ -1.58
DEF1YKL054C NUP49Q02199 472 aa5.17□□□□□ -1.58
DEF1YKL054C YMR181CQ03231 154 aa5.17□□□□□ -1.58
DEF1YKL054C PEX30Q06169 523 aa5.17□□□□□ -1.58
DEF1YKL054C RSA1Q08932 381 aa5.17□□□□□ -1.58
DEF1YKL054C YPL229WQ99395 206 aa5.17□□□□□ -1.58
DEF1YKL054C APD1P38281 316 aa5.16□□□□□ -1.58
DEF1YKL054C SHC1P39000 512 aa5.16□□□□□ -1.58
DEF1YKL054C DFG10P40526 253 aa5.16□□□□□ -1.58
DEF1YKL054C SCS7Q03529 384 aa5.16□□□□□ -1.58
DEF1YKL054C YMR315WQ04869 349 aaKnown RBP5.16□□□□□ -1.58
DEF1YKL054C MUM3Q08750 479 aa5.16□□□□□ -1.58
DEF1YKL054C YCR024C-BQ3E7Z8 88 aa5.16□□□□□ -1.58
DEF1YKL054C STH1P32597 1359 aa5.16□□□□□ -1.58
DEF1YKL054C YOL163WP0CF20 169 aa5.16□□□□□ -1.58
DEF1YKL054C IFM1P25038 676 aa5.16□□□□□ -1.58
DEF1YKL054C GIM4P40005 111 aaKnown RBP5.16□□□□□ -1.58
DEF1YKL054C VRG4P40107 337 aa5.16□□□□□ -1.58
DEF1YKL054C YDL114WQ07530 308 aa5.16□□□□□ -1.58
DEF1YKL054C TPO4Q12256 659 aa5.16□□□□□ -1.58
DEF1YKL054C SNU23Q12368 194 aaPredicted RBP5.16□□□□□ -1.58
DEF1YKL054C YPL119C-AQ3E751 87 aa5.16□□□□□ -1.58
DEF1YKL054C DPM1P14020 267 aaKnown RBP5.15□□□□□ -1.58
DEF1YKL054C SIP2P34164 415 aaKnown RBP5.15□□□□□ -1.58
Retrieved 100 of 5,963 RNA–protein pairs in 48.9 ms